miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18689 5' -55.4 NC_004682.1 + 48183 0.66 0.752167
Target:  5'- cGCCGAGuCGACCGAG--UGaUGcUCGCc -3'
miRNA:   3'- cCGGCUCuGCUGGUUCcaGC-AC-AGCG- -5'
18689 5' -55.4 NC_004682.1 + 9432 0.73 0.33991
Target:  5'- gGGaUCGGGAUGACCGggaccaucuccAGGUUGUG-CGCg -3'
miRNA:   3'- -CC-GGCUCUGCUGGU-----------UCCAGCACaGCG- -5'
18689 5' -55.4 NC_004682.1 + 17855 0.74 0.279589
Target:  5'- gGGCCGGGAUGugCGgugccAGGUuggucaccagCGUGUUGCc -3'
miRNA:   3'- -CCGGCUCUGCugGU-----UCCA----------GCACAGCG- -5'
18689 5' -55.4 NC_004682.1 + 37047 0.75 0.2464
Target:  5'- aGGCCGAGACGguuccgauccACCGAGGcCGguucacgGUCGa -3'
miRNA:   3'- -CCGGCUCUGC----------UGGUUCCaGCa------CAGCg -5'
18689 5' -55.4 NC_004682.1 + 887 0.66 0.710469
Target:  5'- uGGCCcgcuauauGCGGCCAGGGuggcguUCGgucgGUCGCu -3'
miRNA:   3'- -CCGGcuc-----UGCUGGUUCC------AGCa---CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 16435 0.66 0.710469
Target:  5'- -uUCGAGACGGCCA--GUCGaccGUCGUu -3'
miRNA:   3'- ccGGCUCUGCUGGUucCAGCa--CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 11863 0.67 0.667569
Target:  5'- cGCCGAGACGGCaccGGUCcaGUGggggaUGCu -3'
miRNA:   3'- cCGGCUCUGCUGguuCCAG--CACa----GCG- -5'
18689 5' -55.4 NC_004682.1 + 20030 0.67 0.656736
Target:  5'- uGCgGGcGAUGGCCGcuGUgGUGUCGCc -3'
miRNA:   3'- cCGgCU-CUGCUGGUucCAgCACAGCG- -5'
18689 5' -55.4 NC_004682.1 + 14968 0.68 0.601353
Target:  5'- aGCCGAGACG-CCGAacacaccaggcguGGUCGaggcguUCGCg -3'
miRNA:   3'- cCGGCUCUGCuGGUU-------------CCAGCac----AGCG- -5'
18689 5' -55.4 NC_004682.1 + 49654 0.73 0.348082
Target:  5'- gGGCCGAGACG-CUGAcGGUgGU-UCGCa -3'
miRNA:   3'- -CCGGCUCUGCuGGUU-CCAgCAcAGCG- -5'
18689 5' -55.4 NC_004682.1 + 27235 0.71 0.437246
Target:  5'- cGCCGAGcAgGGCCAcacGGUCGUcggGUCGUu -3'
miRNA:   3'- cCGGCUC-UgCUGGUu--CCAGCA---CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 40351 0.67 0.645882
Target:  5'- cGaaGAGAUGACCAGGGUCa---CGCu -3'
miRNA:   3'- cCggCUCUGCUGGUUCCAGcacaGCG- -5'
18689 5' -55.4 NC_004682.1 + 47692 0.66 0.752167
Target:  5'- uGGCUGaAGGCaaggucuCCGAGGcCG-GUCGCc -3'
miRNA:   3'- -CCGGC-UCUGcu-----GGUUCCaGCaCAGCG- -5'
18689 5' -55.4 NC_004682.1 + 33787 0.71 0.418371
Target:  5'- cGGCCaAGGCGgcucccGCCAAGGUgaccaaCGUgGUCGCu -3'
miRNA:   3'- -CCGGcUCUGC------UGGUUCCA------GCA-CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 43895 0.66 0.735677
Target:  5'- aGGCCcagGAGAUGuucaaggaggaguacGCCAAaGagGUGUCGCa -3'
miRNA:   3'- -CCGG---CUCUGC---------------UGGUUcCagCACAGCG- -5'
18689 5' -55.4 NC_004682.1 + 34995 0.67 0.656736
Target:  5'- -uCCGGGAacUGACCGAGGggaugGUCGCc -3'
miRNA:   3'- ccGGCUCU--GCUGGUUCCagca-CAGCG- -5'
18689 5' -55.4 NC_004682.1 + 13543 0.73 0.355555
Target:  5'- uGGCCGGGAUG-CCGgucuuggaugggcGGGUCuggGUGUUGCc -3'
miRNA:   3'- -CCGGCUCUGCuGGU-------------UCCAG---CACAGCG- -5'
18689 5' -55.4 NC_004682.1 + 43228 0.73 0.331879
Target:  5'- aGGCCGGGACGACCGccuGGaccggagCGUGgcgGCu -3'
miRNA:   3'- -CCGGCUCUGCUGGUu--CCa------GCACag-CG- -5'
18689 5' -55.4 NC_004682.1 + 12127 0.66 0.731512
Target:  5'- cGGCCagcGAcACGACCuuGGUCGUcUCGg -3'
miRNA:   3'- -CCGG---CUcUGCUGGuuCCAGCAcAGCg -5'
18689 5' -55.4 NC_004682.1 + 2227 0.67 0.678369
Target:  5'- gGGCCuuGugGACCGguAGGUCccUGcUCGCc -3'
miRNA:   3'- -CCGGcuCugCUGGU--UCCAGc-AC-AGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.