miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1869 3' -58.2 NC_001347.2 + 152527 0.66 0.905448
Target:  5'- aGCGaGGCgGCCgAGCgGGCGcaauuugUACGCg -3'
miRNA:   3'- -UGUaCCGgCGGgUUGaCCGCa------GUGCG- -5'
1869 3' -58.2 NC_001347.2 + 35792 0.66 0.905448
Target:  5'- uGC-UGGCCGCCgCuGCacGGCaUCAUGCu -3'
miRNA:   3'- -UGuACCGGCGG-GuUGa-CCGcAGUGCG- -5'
1869 3' -58.2 NC_001347.2 + 38095 0.66 0.905448
Target:  5'- ---cGGCCGCggcgCgGGCUcGGCGUCcCGCc -3'
miRNA:   3'- uguaCCGGCG----GgUUGA-CCGCAGuGCG- -5'
1869 3' -58.2 NC_001347.2 + 144476 0.66 0.905448
Target:  5'- cCAUGGaagCGCCCAGCgccccgacgUGGgGUCGaugaGCa -3'
miRNA:   3'- uGUACCg--GCGGGUUG---------ACCgCAGUg---CG- -5'
1869 3' -58.2 NC_001347.2 + 71700 0.66 0.905448
Target:  5'- cGCAcgGGCaCGgCCuGCUGuGCG-CGCGCu -3'
miRNA:   3'- -UGUa-CCG-GCgGGuUGAC-CGCaGUGCG- -5'
1869 3' -58.2 NC_001347.2 + 85166 0.66 0.904851
Target:  5'- gACAUGGCCuauGCCugcgaCAACgcgGGCGUacuacccCACGUc -3'
miRNA:   3'- -UGUACCGG---CGG-----GUUGa--CCGCA-------GUGCG- -5'
1869 3' -58.2 NC_001347.2 + 73282 0.66 0.904851
Target:  5'- cCGUGGCUGCCCgcgcgcuuuGcgacucugggcccGCUGGUG-CugGCu -3'
miRNA:   3'- uGUACCGGCGGG---------U-------------UGACCGCaGugCG- -5'
1869 3' -58.2 NC_001347.2 + 70827 0.66 0.901831
Target:  5'- ---cGGCCGCUCGAUgacgaugucGGCGcggcggcugcugaacUCGCGCg -3'
miRNA:   3'- uguaCCGGCGGGUUGa--------CCGC---------------AGUGCG- -5'
1869 3' -58.2 NC_001347.2 + 73006 0.66 0.899376
Target:  5'- gACGUcGGCgGUCCuccagcagcAGCUGGUGcaUCACGUg -3'
miRNA:   3'- -UGUA-CCGgCGGG---------UUGACCGC--AGUGCG- -5'
1869 3' -58.2 NC_001347.2 + 29939 0.66 0.899376
Target:  5'- --cUGGCCGCCgGGCUGGaaccuaGUgcUGCa -3'
miRNA:   3'- uguACCGGCGGgUUGACCg-----CAguGCG- -5'
1869 3' -58.2 NC_001347.2 + 167021 0.66 0.899376
Target:  5'- cCGUGGCCa-CCAAC-GGCGguaACGCc -3'
miRNA:   3'- uGUACCGGcgGGUUGaCCGCag-UGCG- -5'
1869 3' -58.2 NC_001347.2 + 189683 0.66 0.899376
Target:  5'- aGCGuucUGGCCGCCggCGAUgccggGGUGUUGCGg -3'
miRNA:   3'- -UGU---ACCGGCGG--GUUGa----CCGCAGUGCg -5'
1869 3' -58.2 NC_001347.2 + 223962 0.66 0.899376
Target:  5'- ---cGGCCGCgCAA--GGCGugaUCACGCc -3'
miRNA:   3'- uguaCCGGCGgGUUgaCCGC---AGUGCG- -5'
1869 3' -58.2 NC_001347.2 + 20428 0.66 0.899376
Target:  5'- cGCGUGGCCGU----CUGGC-UCACGa -3'
miRNA:   3'- -UGUACCGGCGgguuGACCGcAGUGCg -5'
1869 3' -58.2 NC_001347.2 + 78931 0.66 0.893089
Target:  5'- cGCGUGG--GCCCAGcCUGGCGcacUACGUg -3'
miRNA:   3'- -UGUACCggCGGGUU-GACCGCa--GUGCG- -5'
1869 3' -58.2 NC_001347.2 + 4763 0.66 0.893089
Target:  5'- gGCG-GGCgaauCGgCCGGCUGGuCGUCgGCGCu -3'
miRNA:   3'- -UGUaCCG----GCgGGUUGACC-GCAG-UGCG- -5'
1869 3' -58.2 NC_001347.2 + 77072 0.66 0.886591
Target:  5'- uGCA-GGUCGUgCAGCgugaGGCGcgggCGCGCg -3'
miRNA:   3'- -UGUaCCGGCGgGUUGa---CCGCa---GUGCG- -5'
1869 3' -58.2 NC_001347.2 + 101944 0.66 0.879885
Target:  5'- -uGUGGCCGCCgCuGCUcGaGCaccUCACGCa -3'
miRNA:   3'- ugUACCGGCGG-GuUGA-C-CGc--AGUGCG- -5'
1869 3' -58.2 NC_001347.2 + 45598 0.66 0.879885
Target:  5'- -gAUGGagcgCGCCCAcauguGC-GGCGUCugGUg -3'
miRNA:   3'- ugUACCg---GCGGGU-----UGaCCGCAGugCG- -5'
1869 3' -58.2 NC_001347.2 + 58762 0.66 0.879203
Target:  5'- aGCGUGugccuGCCGCCguGCuugagucccgauaUGGCGUCGUGCc -3'
miRNA:   3'- -UGUAC-----CGGCGGguUG-------------ACCGCAGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.