miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18690 3' -54.3 NC_004682.1 + 42724 0.66 0.779484
Target:  5'- gGCCUccaGCGUCGggaaCGGgguucGCGACGgcugGGUCAg -3'
miRNA:   3'- gUGGA---UGCAGC----GCC-----UGUUGCa---CCAGU- -5'
18690 3' -54.3 NC_004682.1 + 17599 0.66 0.769376
Target:  5'- uCACC-ACGcUCGCGGAC-ACGcUGGg-- -3'
miRNA:   3'- -GUGGaUGC-AGCGCCUGuUGC-ACCagu -5'
18690 3' -54.3 NC_004682.1 + 2744 0.66 0.769375
Target:  5'- gACCUucggggacagcGCGUCGUaGGCAGCcugGGUCAg -3'
miRNA:   3'- gUGGA-----------UGCAGCGcCUGUUGca-CCAGU- -5'
18690 3' -54.3 NC_004682.1 + 12178 0.66 0.769375
Target:  5'- cCGCCagguagGCGUugcccUGCGGACccgacgcCGUGGUCAg -3'
miRNA:   3'- -GUGGa-----UGCA-----GCGCCUGuu-----GCACCAGU- -5'
18690 3' -54.3 NC_004682.1 + 41915 0.66 0.759125
Target:  5'- uUACCUccaACGcaucccagacCGUGGGCAGCG-GGUCAc -3'
miRNA:   3'- -GUGGA---UGCa---------GCGCCUGUUGCaCCAGU- -5'
18690 3' -54.3 NC_004682.1 + 3217 0.66 0.748742
Target:  5'- uCACCUACGUCGgCGGcGCGGCacagGG-CGa -3'
miRNA:   3'- -GUGGAUGCAGC-GCC-UGUUGca--CCaGU- -5'
18690 3' -54.3 NC_004682.1 + 41541 0.66 0.748742
Target:  5'- cUACCUACacgacauggCGCGGuCGacgagcgccuGCGUGGUCGg -3'
miRNA:   3'- -GUGGAUGca-------GCGCCuGU----------UGCACCAGU- -5'
18690 3' -54.3 NC_004682.1 + 3091 0.66 0.738239
Target:  5'- gACCUGCGUUGCuGACcACGggauGUCGa -3'
miRNA:   3'- gUGGAUGCAGCGcCUGuUGCac--CAGU- -5'
18690 3' -54.3 NC_004682.1 + 11801 0.66 0.738239
Target:  5'- uGCCgucucgGCGUCGUGGAcCGGCGaGGcCGa -3'
miRNA:   3'- gUGGa-----UGCAGCGCCU-GUUGCaCCaGU- -5'
18690 3' -54.3 NC_004682.1 + 4807 0.66 0.738239
Target:  5'- gCACau-CGUccggucgaucaaCGCGGGCuacgGCGUGGUCAu -3'
miRNA:   3'- -GUGgauGCA------------GCGCCUGu---UGCACCAGU- -5'
18690 3' -54.3 NC_004682.1 + 45549 0.67 0.684338
Target:  5'- cCGCCUGCGcCGgGGcCGGCGUGaG-CAg -3'
miRNA:   3'- -GUGGAUGCaGCgCCuGUUGCAC-CaGU- -5'
18690 3' -54.3 NC_004682.1 + 36336 0.68 0.662344
Target:  5'- gGCCguCGUCGCGGGUGACGUGcUCGa -3'
miRNA:   3'- gUGGauGCAGCGCCUGUUGCACcAGU- -5'
18690 3' -54.3 NC_004682.1 + 29488 0.69 0.607042
Target:  5'- uGCCUgcgaguACGUUGCGGAaGACGUuGUCGg -3'
miRNA:   3'- gUGGA------UGCAGCGCCUgUUGCAcCAGU- -5'
18690 3' -54.3 NC_004682.1 + 35129 0.69 0.574044
Target:  5'- cCACC-ACGcacUGCGcGAUGGCGUGGUCGa -3'
miRNA:   3'- -GUGGaUGCa--GCGC-CUGUUGCACCAGU- -5'
18690 3' -54.3 NC_004682.1 + 12309 1.09 0.001321
Target:  5'- cCACCUACGUCGCGGACAACGUGGUCAa -3'
miRNA:   3'- -GUGGAUGCAGCGCCUGUUGCACCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.