miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18691 3' -56.1 NC_004682.1 + 7095 0.66 0.662723
Target:  5'- aUCGGgccuacguGGGCAcGCacuGUCGACGgCGGCu -3'
miRNA:   3'- -AGCC--------UCCGUuCGag-UAGCUGCgGUCG- -5'
18691 3' -56.1 NC_004682.1 + 32858 0.66 0.662723
Target:  5'- cCGcuGGC-GGUUCGUgGACGcCCAGCu -3'
miRNA:   3'- aGCcuCCGuUCGAGUAgCUGC-GGUCG- -5'
18691 3' -56.1 NC_004682.1 + 47231 0.66 0.658327
Target:  5'- aCGGAGGCcacaucgGAGCcaucgccgaagccaUCAuccgcauccUCGACGCCugAGCc -3'
miRNA:   3'- aGCCUCCG-------UUCG--------------AGU---------AGCUGCGG--UCG- -5'
18691 3' -56.1 NC_004682.1 + 4918 0.66 0.651725
Target:  5'- aCGGAGGCGcgacccAGUUCAUgaCcACGCCguAGCc -3'
miRNA:   3'- aGCCUCCGU------UCGAGUA--GcUGCGG--UCG- -5'
18691 3' -56.1 NC_004682.1 + 43460 0.66 0.651725
Target:  5'- cUCGGccaGGGCAAcGCUgua-GACGCCAaGCu -3'
miRNA:   3'- -AGCC---UCCGUU-CGAguagCUGCGGU-CG- -5'
18691 3' -56.1 NC_004682.1 + 35312 0.66 0.629687
Target:  5'- cUCGG-GGCcgcugccguuGGCUCGgauguugaUCGACGUguGCg -3'
miRNA:   3'- -AGCCuCCGu---------UCGAGU--------AGCUGCGguCG- -5'
18691 3' -56.1 NC_004682.1 + 3167 0.66 0.629687
Target:  5'- cUCGGGcaccacGGCGGGC-CAg-GGCGCgGGCa -3'
miRNA:   3'- -AGCCU------CCGUUCGaGUagCUGCGgUCG- -5'
18691 3' -56.1 NC_004682.1 + 22622 0.66 0.629687
Target:  5'- -aGGAGaaCGAGUUCAUgCuGCGCCAGUa -3'
miRNA:   3'- agCCUCc-GUUCGAGUA-GcUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 46332 0.66 0.618665
Target:  5'- cUCGGGcgcuGGCGAGCUgaCAUgGACGa-GGCg -3'
miRNA:   3'- -AGCCU----CCGUUCGA--GUAgCUGCggUCG- -5'
18691 3' -56.1 NC_004682.1 + 27412 0.67 0.607656
Target:  5'- aCGGGcGGCAcaaucGC-CGUCGGCGCacuGGCg -3'
miRNA:   3'- aGCCU-CCGUu----CGaGUAGCUGCGg--UCG- -5'
18691 3' -56.1 NC_004682.1 + 24443 0.67 0.606556
Target:  5'- gUUGGAGGCGAagacguacuugacGC-CGUCGACcacgcagcCCAGCu -3'
miRNA:   3'- -AGCCUCCGUU-------------CGaGUAGCUGc-------GGUCG- -5'
18691 3' -56.1 NC_004682.1 + 28284 0.67 0.596668
Target:  5'- aCGGcuGUcgaAAGCUgAUCGACGCC-GCc -3'
miRNA:   3'- aGCCucCG---UUCGAgUAGCUGCGGuCG- -5'
18691 3' -56.1 NC_004682.1 + 17553 0.67 0.596668
Target:  5'- cUGGGuacGGCucuGGCUCcuAUCGucacggcgcucACGCCAGCg -3'
miRNA:   3'- aGCCU---CCGu--UCGAG--UAGC-----------UGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 27509 0.67 0.596668
Target:  5'- cUUGGAuGGUgccGCuugUCAUCGACGgCGGCg -3'
miRNA:   3'- -AGCCU-CCGuu-CG---AGUAGCUGCgGUCG- -5'
18691 3' -56.1 NC_004682.1 + 5339 0.67 0.58571
Target:  5'- cUCGGuGGCccggAAGUcgUCGgacUCGugGCCGGUc -3'
miRNA:   3'- -AGCCuCCG----UUCG--AGU---AGCugCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 34941 0.67 0.574791
Target:  5'- cCGGAGGaugcGGUUguUCGG-GCCAGCc -3'
miRNA:   3'- aGCCUCCgu--UCGAguAGCUgCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 5164 0.67 0.571524
Target:  5'- aCGGGGGUcggugcgggugcggGAGCagcCGgugCGGCGUCGGCg -3'
miRNA:   3'- aGCCUCCG--------------UUCGa--GUa--GCUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 50042 0.67 0.563919
Target:  5'- cCGGAGcaGCAuGCUCAUCGGgacgGCCAcagGCa -3'
miRNA:   3'- aGCCUC--CGUuCGAGUAGCUg---CGGU---CG- -5'
18691 3' -56.1 NC_004682.1 + 35517 0.67 0.563919
Target:  5'- -aGGAGGCAGGCgUCcuGUCGACGg-AGUa -3'
miRNA:   3'- agCCUCCGUUCG-AG--UAGCUGCggUCG- -5'
18691 3' -56.1 NC_004682.1 + 37697 0.67 0.562835
Target:  5'- gCGGGcGGUcaagucccugaucGGGUUCAUCGGCGacuaCCAGCc -3'
miRNA:   3'- aGCCU-CCG-------------UUCGAGUAGCUGC----GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.