miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18691 3' -56.1 NC_004682.1 + 11967 0.69 0.439684
Target:  5'- aUCGccGAGGCAucgcGCUCAaguUCGACG-CGGCu -3'
miRNA:   3'- -AGC--CUCCGUu---CGAGU---AGCUGCgGUCG- -5'
18691 3' -56.1 NC_004682.1 + 35623 0.69 0.479528
Target:  5'- gUCGGGGccaacuacaGCAaccGGUUCAUCGACuaCGGCc -3'
miRNA:   3'- -AGCCUC---------CGU---UCGAGUAGCUGcgGUCG- -5'
18691 3' -56.1 NC_004682.1 + 12848 0.68 0.500103
Target:  5'- -gGGAGGCcGGUUUcggGGCGUCAGCg -3'
miRNA:   3'- agCCUCCGuUCGAGuagCUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 420 0.68 0.500103
Target:  5'- cUUGGGGGC-GGCUCcUCGGaggGCCgAGCc -3'
miRNA:   3'- -AGCCUCCGuUCGAGuAGCUg--CGG-UCG- -5'
18691 3' -56.1 NC_004682.1 + 7570 0.68 0.510536
Target:  5'- -aGGccGGCGGGCgCAUCGAgGCC-GCa -3'
miRNA:   3'- agCCu-CCGUUCGaGUAGCUgCGGuCG- -5'
18691 3' -56.1 NC_004682.1 + 32752 0.68 0.521059
Target:  5'- aUGGuGaCGAGUUCGUCGuACGCCucGGCg -3'
miRNA:   3'- aGCCuCcGUUCGAGUAGC-UGCGG--UCG- -5'
18691 3' -56.1 NC_004682.1 + 4619 0.68 0.521059
Target:  5'- cCGGAGGCcacGCUCGcugccgagaUCGAgGCCAu- -3'
miRNA:   3'- aGCCUCCGuu-CGAGU---------AGCUgCGGUcg -5'
18691 3' -56.1 NC_004682.1 + 47699 0.68 0.531666
Target:  5'- aUCGGccuggcugaAGGCAAGgUCuccgaggcCGGuCGCCAGCg -3'
miRNA:   3'- -AGCC---------UCCGUUCgAGua------GCU-GCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 33510 0.68 0.531666
Target:  5'- gCGG-GGCcAGCUUcgCGAaCGCCuGGCc -3'
miRNA:   3'- aGCCuCCGuUCGAGuaGCU-GCGG-UCG- -5'
18691 3' -56.1 NC_004682.1 + 6671 0.68 0.542349
Target:  5'- cCGGuGGCAGGCccagacUCGuacggcauccUCGAUGaCCGGCu -3'
miRNA:   3'- aGCCuCCGUUCG------AGU----------AGCUGC-GGUCG- -5'
18691 3' -56.1 NC_004682.1 + 41785 0.67 0.553103
Target:  5'- gUCGGAGuCAGcGCUgaaguacagCGUCGggacucGCGCCAGCa -3'
miRNA:   3'- -AGCCUCcGUU-CGA---------GUAGC------UGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 37697 0.67 0.562835
Target:  5'- gCGGGcGGUcaagucccugaucGGGUUCAUCGGCGacuaCCAGCc -3'
miRNA:   3'- aGCCU-CCG-------------UUCGAGUAGCUGC----GGUCG- -5'
18691 3' -56.1 NC_004682.1 + 35517 0.67 0.563919
Target:  5'- -aGGAGGCAGGCgUCcuGUCGACGg-AGUa -3'
miRNA:   3'- agCCUCCGUUCG-AG--UAGCUGCggUCG- -5'
18691 3' -56.1 NC_004682.1 + 50042 0.67 0.563919
Target:  5'- cCGGAGcaGCAuGCUCAUCGGgacgGCCAcagGCa -3'
miRNA:   3'- aGCCUC--CGUuCGAGUAGCUg---CGGU---CG- -5'
18691 3' -56.1 NC_004682.1 + 5164 0.67 0.571524
Target:  5'- aCGGGGGUcggugcgggugcggGAGCagcCGgugCGGCGUCGGCg -3'
miRNA:   3'- aGCCUCCG--------------UUCGa--GUa--GCUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 34941 0.67 0.574791
Target:  5'- cCGGAGGaugcGGUUguUCGG-GCCAGCc -3'
miRNA:   3'- aGCCUCCgu--UCGAguAGCUgCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 5339 0.67 0.58571
Target:  5'- cUCGGuGGCccggAAGUcgUCGgacUCGugGCCGGUc -3'
miRNA:   3'- -AGCCuCCG----UUCG--AGU---AGCugCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 28284 0.67 0.596668
Target:  5'- aCGGcuGUcgaAAGCUgAUCGACGCC-GCc -3'
miRNA:   3'- aGCCucCG---UUCGAgUAGCUGCGGuCG- -5'
18691 3' -56.1 NC_004682.1 + 17553 0.67 0.596668
Target:  5'- cUGGGuacGGCucuGGCUCcuAUCGucacggcgcucACGCCAGCg -3'
miRNA:   3'- aGCCU---CCGu--UCGAG--UAGC-----------UGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 27509 0.67 0.596668
Target:  5'- cUUGGAuGGUgccGCuugUCAUCGACGgCGGCg -3'
miRNA:   3'- -AGCCU-CCGuu-CG---AGUAGCUGCgGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.