miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18691 3' -56.1 NC_004682.1 + 41785 0.67 0.553103
Target:  5'- gUCGGAGuCAGcGCUgaaguacagCGUCGggacucGCGCCAGCa -3'
miRNA:   3'- -AGCCUCcGUU-CGA---------GUAGC------UGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 6671 0.68 0.542349
Target:  5'- cCGGuGGCAGGCccagacUCGuacggcauccUCGAUGaCCGGCu -3'
miRNA:   3'- aGCCuCCGUUCG------AGU----------AGCUGC-GGUCG- -5'
18691 3' -56.1 NC_004682.1 + 47699 0.68 0.531666
Target:  5'- aUCGGccuggcugaAGGCAAGgUCuccgaggcCGGuCGCCAGCg -3'
miRNA:   3'- -AGCC---------UCCGUUCgAGua------GCU-GCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 33510 0.68 0.531666
Target:  5'- gCGG-GGCcAGCUUcgCGAaCGCCuGGCc -3'
miRNA:   3'- aGCCuCCGuUCGAGuaGCU-GCGG-UCG- -5'
18691 3' -56.1 NC_004682.1 + 32752 0.68 0.521059
Target:  5'- aUGGuGaCGAGUUCGUCGuACGCCucGGCg -3'
miRNA:   3'- aGCCuCcGUUCGAGUAGC-UGCGG--UCG- -5'
18691 3' -56.1 NC_004682.1 + 4619 0.68 0.521059
Target:  5'- cCGGAGGCcacGCUCGcugccgagaUCGAgGCCAu- -3'
miRNA:   3'- aGCCUCCGuu-CGAGU---------AGCUgCGGUcg -5'
18691 3' -56.1 NC_004682.1 + 7570 0.68 0.510536
Target:  5'- -aGGccGGCGGGCgCAUCGAgGCC-GCa -3'
miRNA:   3'- agCCu-CCGUUCGaGUAGCUgCGGuCG- -5'
18691 3' -56.1 NC_004682.1 + 12848 0.68 0.500103
Target:  5'- -gGGAGGCcGGUUUcggGGCGUCAGCg -3'
miRNA:   3'- agCCUCCGuUCGAGuagCUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 420 0.68 0.500103
Target:  5'- cUUGGGGGC-GGCUCcUCGGaggGCCgAGCc -3'
miRNA:   3'- -AGCCUCCGuUCGAGuAGCUg--CGG-UCG- -5'
18691 3' -56.1 NC_004682.1 + 35623 0.69 0.479528
Target:  5'- gUCGGGGccaacuacaGCAaccGGUUCAUCGACuaCGGCc -3'
miRNA:   3'- -AGCCUC---------CGU---UCGAGUAGCUGcgGUCG- -5'
18691 3' -56.1 NC_004682.1 + 35758 0.69 0.439684
Target:  5'- -gGGAGGUGAuagcGCUCGUCcaccaGCGCCAGg -3'
miRNA:   3'- agCCUCCGUU----CGAGUAGc----UGCGGUCg -5'
18691 3' -56.1 NC_004682.1 + 11967 0.69 0.439684
Target:  5'- aUCGccGAGGCAucgcGCUCAaguUCGACG-CGGCu -3'
miRNA:   3'- -AGC--CUCCGUu---CGAGU---AGCUGCgGUCG- -5'
18691 3' -56.1 NC_004682.1 + 9247 0.69 0.439684
Target:  5'- -aGGaAGGCAacgAGgUCAUCGGgGCCAcGCu -3'
miRNA:   3'- agCC-UCCGU---UCgAGUAGCUgCGGU-CG- -5'
18691 3' -56.1 NC_004682.1 + 2215 0.69 0.439684
Target:  5'- cCGGuAGGUcccuGCUCGccuUCGGgGCCGGCu -3'
miRNA:   3'- aGCC-UCCGuu--CGAGU---AGCUgCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 47267 0.69 0.438712
Target:  5'- cUCGcGGGGCAAGcCUCGgaucuccUCGgccaGCGCCAGg -3'
miRNA:   3'- -AGC-CUCCGUUC-GAGU-------AGC----UGCGGUCg -5'
18691 3' -56.1 NC_004682.1 + 1420 0.7 0.43002
Target:  5'- gCGGucGCGAcuucaaguggacGUUCGagaaucUCGACGCCAGCg -3'
miRNA:   3'- aGCCucCGUU------------CGAGU------AGCUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 3051 0.7 0.43002
Target:  5'- gUCGGAcaaGGCAGGC-CGUCcaacggaacgGGCGCgAGCc -3'
miRNA:   3'- -AGCCU---CCGUUCGaGUAG----------CUGCGgUCG- -5'
18691 3' -56.1 NC_004682.1 + 31484 0.7 0.42906
Target:  5'- cUGGAGGaguugguCAAGCacuaCAUCGACGCCAa- -3'
miRNA:   3'- aGCCUCC-------GUUCGa---GUAGCUGCGGUcg -5'
18691 3' -56.1 NC_004682.1 + 40682 0.7 0.411072
Target:  5'- gUCGGcacgcGGCAcugcauggcucgGGC-CAUCGcCGCCGGCa -3'
miRNA:   3'- -AGCCu----CCGU------------UCGaGUAGCuGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 44155 0.7 0.401794
Target:  5'- aCGGAGGCAGGCUUggaguUCcaccacCGCCuGCg -3'
miRNA:   3'- aGCCUCCGUUCGAGu----AGcu----GCGGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.