miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18691 3' -56.1 NC_004682.1 + 593 0.7 0.392651
Target:  5'- aCGGAGaCAGguGCUCcgUGACGCgGGCu -3'
miRNA:   3'- aGCCUCcGUU--CGAGuaGCUGCGgUCG- -5'
18691 3' -56.1 NC_004682.1 + 48457 0.7 0.392651
Target:  5'- aUGGGGGCGAuGCUCcUgGGCGaCCAGa -3'
miRNA:   3'- aGCCUCCGUU-CGAGuAgCUGC-GGUCg -5'
18691 3' -56.1 NC_004682.1 + 15639 0.7 0.382751
Target:  5'- aCGcGAGGUcgucgcgGAGUUCAUCGACcaaCCGGCu -3'
miRNA:   3'- aGC-CUCCG-------UUCGAGUAGCUGc--GGUCG- -5'
18691 3' -56.1 NC_004682.1 + 20268 0.71 0.374775
Target:  5'- gUGGA-GCAGGuCUCGUCGGagaacggcaGCCAGCu -3'
miRNA:   3'- aGCCUcCGUUC-GAGUAGCUg--------CGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 23677 0.71 0.366046
Target:  5'- gCGG-GGCGAGUUCGaugaGugGCUGGCg -3'
miRNA:   3'- aGCCuCCGUUCGAGUag--CugCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 21577 0.71 0.366046
Target:  5'- uUCGu-GGCGGGCggugaGUCGAUGCCAGg -3'
miRNA:   3'- -AGCcuCCGUUCGag---UAGCUGCGGUCg -5'
18691 3' -56.1 NC_004682.1 + 16527 0.73 0.286635
Target:  5'- aCGGAcucaGCAGGCUUggCuGCGCCAGCa -3'
miRNA:   3'- aGCCUc---CGUUCGAGuaGcUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 23781 0.73 0.286635
Target:  5'- cUCGGucGCcAGCgacccgaagGUCGACGCCAGCc -3'
miRNA:   3'- -AGCCucCGuUCGag-------UAGCUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 20010 0.73 0.27248
Target:  5'- cUGGAGGC--GCUCccgagcAUCGGgGCCGGCa -3'
miRNA:   3'- aGCCUCCGuuCGAG------UAGCUgCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 15443 0.73 0.270406
Target:  5'- aCGaGGGCAAGCagCGcgaagaggacgaccUCGACGCCAGUg -3'
miRNA:   3'- aGCcUCCGUUCGa-GU--------------AGCUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 13257 1.13 0.000387
Target:  5'- aUCGGAGGCAAGCUCAUCGACGCCAGCa -3'
miRNA:   3'- -AGCCUCCGUUCGAGUAGCUGCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.