miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18691 3' -56.1 NC_004682.1 + 17553 0.67 0.596668
Target:  5'- cUGGGuacGGCucuGGCUCcuAUCGucacggcgcucACGCCAGCg -3'
miRNA:   3'- aGCCU---CCGu--UCGAG--UAGC-----------UGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 20010 0.73 0.27248
Target:  5'- cUGGAGGC--GCUCccgagcAUCGGgGCCGGCa -3'
miRNA:   3'- aGCCUCCGuuCGAG------UAGCUgCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 20268 0.71 0.374775
Target:  5'- gUGGA-GCAGGuCUCGUCGGagaacggcaGCCAGCu -3'
miRNA:   3'- aGCCUcCGUUC-GAGUAGCUg--------CGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 21577 0.71 0.366046
Target:  5'- uUCGu-GGCGGGCggugaGUCGAUGCCAGg -3'
miRNA:   3'- -AGCcuCCGUUCGag---UAGCUGCGGUCg -5'
18691 3' -56.1 NC_004682.1 + 22622 0.66 0.629687
Target:  5'- -aGGAGaaCGAGUUCAUgCuGCGCCAGUa -3'
miRNA:   3'- agCCUCc-GUUCGAGUA-GcUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 23677 0.71 0.366046
Target:  5'- gCGG-GGCGAGUUCGaugaGugGCUGGCg -3'
miRNA:   3'- aGCCuCCGUUCGAGUag--CugCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 23781 0.73 0.286635
Target:  5'- cUCGGucGCcAGCgacccgaagGUCGACGCCAGCc -3'
miRNA:   3'- -AGCCucCGuUCGag-------UAGCUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 24443 0.67 0.606556
Target:  5'- gUUGGAGGCGAagacguacuugacGC-CGUCGACcacgcagcCCAGCu -3'
miRNA:   3'- -AGCCUCCGUU-------------CGaGUAGCUGc-------GGUCG- -5'
18691 3' -56.1 NC_004682.1 + 27412 0.67 0.607656
Target:  5'- aCGGGcGGCAcaaucGC-CGUCGGCGCacuGGCg -3'
miRNA:   3'- aGCCU-CCGUu----CGaGUAGCUGCGg--UCG- -5'
18691 3' -56.1 NC_004682.1 + 27509 0.67 0.596668
Target:  5'- cUUGGAuGGUgccGCuugUCAUCGACGgCGGCg -3'
miRNA:   3'- -AGCCU-CCGuu-CG---AGUAGCUGCgGUCG- -5'
18691 3' -56.1 NC_004682.1 + 28284 0.67 0.596668
Target:  5'- aCGGcuGUcgaAAGCUgAUCGACGCC-GCc -3'
miRNA:   3'- aGCCucCG---UUCGAgUAGCUGCGGuCG- -5'
18691 3' -56.1 NC_004682.1 + 31484 0.7 0.42906
Target:  5'- cUGGAGGaguugguCAAGCacuaCAUCGACGCCAa- -3'
miRNA:   3'- aGCCUCC-------GUUCGa---GUAGCUGCGGUcg -5'
18691 3' -56.1 NC_004682.1 + 32752 0.68 0.521059
Target:  5'- aUGGuGaCGAGUUCGUCGuACGCCucGGCg -3'
miRNA:   3'- aGCCuCcGUUCGAGUAGC-UGCGG--UCG- -5'
18691 3' -56.1 NC_004682.1 + 32858 0.66 0.662723
Target:  5'- cCGcuGGC-GGUUCGUgGACGcCCAGCu -3'
miRNA:   3'- aGCcuCCGuUCGAGUAgCUGC-GGUCG- -5'
18691 3' -56.1 NC_004682.1 + 33510 0.68 0.531666
Target:  5'- gCGG-GGCcAGCUUcgCGAaCGCCuGGCc -3'
miRNA:   3'- aGCCuCCGuUCGAGuaGCU-GCGG-UCG- -5'
18691 3' -56.1 NC_004682.1 + 34941 0.67 0.574791
Target:  5'- cCGGAGGaugcGGUUguUCGG-GCCAGCc -3'
miRNA:   3'- aGCCUCCgu--UCGAguAGCUgCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 35312 0.66 0.629687
Target:  5'- cUCGG-GGCcgcugccguuGGCUCGgauguugaUCGACGUguGCg -3'
miRNA:   3'- -AGCCuCCGu---------UCGAGU--------AGCUGCGguCG- -5'
18691 3' -56.1 NC_004682.1 + 35517 0.67 0.563919
Target:  5'- -aGGAGGCAGGCgUCcuGUCGACGg-AGUa -3'
miRNA:   3'- agCCUCCGUUCG-AG--UAGCUGCggUCG- -5'
18691 3' -56.1 NC_004682.1 + 35623 0.69 0.479528
Target:  5'- gUCGGGGccaacuacaGCAaccGGUUCAUCGACuaCGGCc -3'
miRNA:   3'- -AGCCUC---------CGU---UCGAGUAGCUGcgGUCG- -5'
18691 3' -56.1 NC_004682.1 + 35758 0.69 0.439684
Target:  5'- -gGGAGGUGAuagcGCUCGUCcaccaGCGCCAGg -3'
miRNA:   3'- agCCUCCGUU----CGAGUAGc----UGCGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.