miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18691 3' -56.1 NC_004682.1 + 50042 0.67 0.563919
Target:  5'- cCGGAGcaGCAuGCUCAUCGGgacgGCCAcagGCa -3'
miRNA:   3'- aGCCUC--CGUuCGAGUAGCUg---CGGU---CG- -5'
18691 3' -56.1 NC_004682.1 + 48457 0.7 0.392651
Target:  5'- aUGGGGGCGAuGCUCcUgGGCGaCCAGa -3'
miRNA:   3'- aGCCUCCGUU-CGAGuAgCUGC-GGUCg -5'
18691 3' -56.1 NC_004682.1 + 47699 0.68 0.531666
Target:  5'- aUCGGccuggcugaAGGCAAGgUCuccgaggcCGGuCGCCAGCg -3'
miRNA:   3'- -AGCC---------UCCGUUCgAGua------GCU-GCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 47267 0.69 0.438712
Target:  5'- cUCGcGGGGCAAGcCUCGgaucuccUCGgccaGCGCCAGg -3'
miRNA:   3'- -AGC-CUCCGUUC-GAGU-------AGC----UGCGGUCg -5'
18691 3' -56.1 NC_004682.1 + 47231 0.66 0.658327
Target:  5'- aCGGAGGCcacaucgGAGCcaucgccgaagccaUCAuccgcauccUCGACGCCugAGCc -3'
miRNA:   3'- aGCCUCCG-------UUCG--------------AGU---------AGCUGCGG--UCG- -5'
18691 3' -56.1 NC_004682.1 + 46332 0.66 0.618665
Target:  5'- cUCGGGcgcuGGCGAGCUgaCAUgGACGa-GGCg -3'
miRNA:   3'- -AGCCU----CCGUUCGA--GUAgCUGCggUCG- -5'
18691 3' -56.1 NC_004682.1 + 44155 0.7 0.401794
Target:  5'- aCGGAGGCAGGCUUggaguUCcaccacCGCCuGCg -3'
miRNA:   3'- aGCCUCCGUUCGAGu----AGcu----GCGGuCG- -5'
18691 3' -56.1 NC_004682.1 + 43460 0.66 0.651725
Target:  5'- cUCGGccaGGGCAAcGCUgua-GACGCCAaGCu -3'
miRNA:   3'- -AGCC---UCCGUU-CGAguagCUGCGGU-CG- -5'
18691 3' -56.1 NC_004682.1 + 41785 0.67 0.553103
Target:  5'- gUCGGAGuCAGcGCUgaaguacagCGUCGggacucGCGCCAGCa -3'
miRNA:   3'- -AGCCUCcGUU-CGA---------GUAGC------UGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 40682 0.7 0.411072
Target:  5'- gUCGGcacgcGGCAcugcauggcucgGGC-CAUCGcCGCCGGCa -3'
miRNA:   3'- -AGCCu----CCGU------------UCGaGUAGCuGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 37697 0.67 0.562835
Target:  5'- gCGGGcGGUcaagucccugaucGGGUUCAUCGGCGacuaCCAGCc -3'
miRNA:   3'- aGCCU-CCG-------------UUCGAGUAGCUGC----GGUCG- -5'
18691 3' -56.1 NC_004682.1 + 35758 0.69 0.439684
Target:  5'- -gGGAGGUGAuagcGCUCGUCcaccaGCGCCAGg -3'
miRNA:   3'- agCCUCCGUU----CGAGUAGc----UGCGGUCg -5'
18691 3' -56.1 NC_004682.1 + 35623 0.69 0.479528
Target:  5'- gUCGGGGccaacuacaGCAaccGGUUCAUCGACuaCGGCc -3'
miRNA:   3'- -AGCCUC---------CGU---UCGAGUAGCUGcgGUCG- -5'
18691 3' -56.1 NC_004682.1 + 35517 0.67 0.563919
Target:  5'- -aGGAGGCAGGCgUCcuGUCGACGg-AGUa -3'
miRNA:   3'- agCCUCCGUUCG-AG--UAGCUGCggUCG- -5'
18691 3' -56.1 NC_004682.1 + 35312 0.66 0.629687
Target:  5'- cUCGG-GGCcgcugccguuGGCUCGgauguugaUCGACGUguGCg -3'
miRNA:   3'- -AGCCuCCGu---------UCGAGU--------AGCUGCGguCG- -5'
18691 3' -56.1 NC_004682.1 + 34941 0.67 0.574791
Target:  5'- cCGGAGGaugcGGUUguUCGG-GCCAGCc -3'
miRNA:   3'- aGCCUCCgu--UCGAguAGCUgCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 33510 0.68 0.531666
Target:  5'- gCGG-GGCcAGCUUcgCGAaCGCCuGGCc -3'
miRNA:   3'- aGCCuCCGuUCGAGuaGCU-GCGG-UCG- -5'
18691 3' -56.1 NC_004682.1 + 32858 0.66 0.662723
Target:  5'- cCGcuGGC-GGUUCGUgGACGcCCAGCu -3'
miRNA:   3'- aGCcuCCGuUCGAGUAgCUGC-GGUCG- -5'
18691 3' -56.1 NC_004682.1 + 32752 0.68 0.521059
Target:  5'- aUGGuGaCGAGUUCGUCGuACGCCucGGCg -3'
miRNA:   3'- aGCCuCcGUUCGAGUAGC-UGCGG--UCG- -5'
18691 3' -56.1 NC_004682.1 + 31484 0.7 0.42906
Target:  5'- cUGGAGGaguugguCAAGCacuaCAUCGACGCCAa- -3'
miRNA:   3'- aGCCUCC-------GUUCGa---GUAGCUGCGGUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.