miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18691 3' -56.1 NC_004682.1 + 34941 0.67 0.574791
Target:  5'- cCGGAGGaugcGGUUguUCGG-GCCAGCc -3'
miRNA:   3'- aGCCUCCgu--UCGAguAGCUgCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 11967 0.69 0.439684
Target:  5'- aUCGccGAGGCAucgcGCUCAaguUCGACG-CGGCu -3'
miRNA:   3'- -AGC--CUCCGUu---CGAGU---AGCUGCgGUCG- -5'
18691 3' -56.1 NC_004682.1 + 35758 0.69 0.439684
Target:  5'- -gGGAGGUGAuagcGCUCGUCcaccaGCGCCAGg -3'
miRNA:   3'- agCCUCCGUU----CGAGUAGc----UGCGGUCg -5'
18691 3' -56.1 NC_004682.1 + 7570 0.68 0.510536
Target:  5'- -aGGccGGCGGGCgCAUCGAgGCC-GCa -3'
miRNA:   3'- agCCu-CCGUUCGaGUAGCUgCGGuCG- -5'
18691 3' -56.1 NC_004682.1 + 4619 0.68 0.521059
Target:  5'- cCGGAGGCcacGCUCGcugccgagaUCGAgGCCAu- -3'
miRNA:   3'- aGCCUCCGuu-CGAGU---------AGCUgCGGUcg -5'
18691 3' -56.1 NC_004682.1 + 32752 0.68 0.521059
Target:  5'- aUGGuGaCGAGUUCGUCGuACGCCucGGCg -3'
miRNA:   3'- aGCCuCcGUUCGAGUAGC-UGCGG--UCG- -5'
18691 3' -56.1 NC_004682.1 + 33510 0.68 0.531666
Target:  5'- gCGG-GGCcAGCUUcgCGAaCGCCuGGCc -3'
miRNA:   3'- aGCCuCCGuUCGAGuaGCU-GCGG-UCG- -5'
18691 3' -56.1 NC_004682.1 + 6671 0.68 0.542349
Target:  5'- cCGGuGGCAGGCccagacUCGuacggcauccUCGAUGaCCGGCu -3'
miRNA:   3'- aGCCuCCGUUCG------AGU----------AGCUGC-GGUCG- -5'
18691 3' -56.1 NC_004682.1 + 41785 0.67 0.553103
Target:  5'- gUCGGAGuCAGcGCUgaaguacagCGUCGggacucGCGCCAGCa -3'
miRNA:   3'- -AGCCUCcGUU-CGA---------GUAGC------UGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 9247 0.69 0.439684
Target:  5'- -aGGaAGGCAacgAGgUCAUCGGgGCCAcGCu -3'
miRNA:   3'- agCC-UCCGU---UCgAGUAGCUgCGGU-CG- -5'
18691 3' -56.1 NC_004682.1 + 47267 0.69 0.438712
Target:  5'- cUCGcGGGGCAAGcCUCGgaucuccUCGgccaGCGCCAGg -3'
miRNA:   3'- -AGC-CUCCGUUC-GAGU-------AGC----UGCGGUCg -5'
18691 3' -56.1 NC_004682.1 + 1420 0.7 0.43002
Target:  5'- gCGGucGCGAcuucaaguggacGUUCGagaaucUCGACGCCAGCg -3'
miRNA:   3'- aGCCucCGUU------------CGAGU------AGCUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 15443 0.73 0.270406
Target:  5'- aCGaGGGCAAGCagCGcgaagaggacgaccUCGACGCCAGUg -3'
miRNA:   3'- aGCcUCCGUUCGa-GU--------------AGCUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 20010 0.73 0.27248
Target:  5'- cUGGAGGC--GCUCccgagcAUCGGgGCCGGCa -3'
miRNA:   3'- aGCCUCCGuuCGAG------UAGCUgCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 16527 0.73 0.286635
Target:  5'- aCGGAcucaGCAGGCUUggCuGCGCCAGCa -3'
miRNA:   3'- aGCCUc---CGUUCGAGuaGcUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 23677 0.71 0.366046
Target:  5'- gCGG-GGCGAGUUCGaugaGugGCUGGCg -3'
miRNA:   3'- aGCCuCCGUUCGAGUag--CugCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 21577 0.71 0.366046
Target:  5'- uUCGu-GGCGGGCggugaGUCGAUGCCAGg -3'
miRNA:   3'- -AGCcuCCGUUCGag---UAGCUGCGGUCg -5'
18691 3' -56.1 NC_004682.1 + 20268 0.71 0.374775
Target:  5'- gUGGA-GCAGGuCUCGUCGGagaacggcaGCCAGCu -3'
miRNA:   3'- aGCCUcCGUUC-GAGUAGCUg--------CGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 593 0.7 0.392651
Target:  5'- aCGGAGaCAGguGCUCcgUGACGCgGGCu -3'
miRNA:   3'- aGCCUCcGUU--CGAGuaGCUGCGgUCG- -5'
18691 3' -56.1 NC_004682.1 + 3051 0.7 0.43002
Target:  5'- gUCGGAcaaGGCAGGC-CGUCcaacggaacgGGCGCgAGCc -3'
miRNA:   3'- -AGCCU---CCGUUCGaGUAG----------CUGCGgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.