miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18691 3' -56.1 NC_004682.1 + 23677 0.71 0.366046
Target:  5'- gCGG-GGCGAGUUCGaugaGugGCUGGCg -3'
miRNA:   3'- aGCCuCCGUUCGAGUag--CugCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 21577 0.71 0.366046
Target:  5'- uUCGu-GGCGGGCggugaGUCGAUGCCAGg -3'
miRNA:   3'- -AGCcuCCGUUCGag---UAGCUGCGGUCg -5'
18691 3' -56.1 NC_004682.1 + 20268 0.71 0.374775
Target:  5'- gUGGA-GCAGGuCUCGUCGGagaacggcaGCCAGCu -3'
miRNA:   3'- aGCCUcCGUUC-GAGUAGCUg--------CGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 593 0.7 0.392651
Target:  5'- aCGGAGaCAGguGCUCcgUGACGCgGGCu -3'
miRNA:   3'- aGCCUCcGUU--CGAGuaGCUGCGgUCG- -5'
18691 3' -56.1 NC_004682.1 + 11967 0.69 0.439684
Target:  5'- aUCGccGAGGCAucgcGCUCAaguUCGACG-CGGCu -3'
miRNA:   3'- -AGC--CUCCGUu---CGAGU---AGCUGCgGUCG- -5'
18691 3' -56.1 NC_004682.1 + 9247 0.69 0.439684
Target:  5'- -aGGaAGGCAacgAGgUCAUCGGgGCCAcGCu -3'
miRNA:   3'- agCC-UCCGU---UCgAGUAGCUgCGGU-CG- -5'
18691 3' -56.1 NC_004682.1 + 47267 0.69 0.438712
Target:  5'- cUCGcGGGGCAAGcCUCGgaucuccUCGgccaGCGCCAGg -3'
miRNA:   3'- -AGC-CUCCGUUC-GAGU-------AGC----UGCGGUCg -5'
18691 3' -56.1 NC_004682.1 + 1420 0.7 0.43002
Target:  5'- gCGGucGCGAcuucaaguggacGUUCGagaaucUCGACGCCAGCg -3'
miRNA:   3'- aGCCucCGUU------------CGAGU------AGCUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 3051 0.7 0.43002
Target:  5'- gUCGGAcaaGGCAGGC-CGUCcaacggaacgGGCGCgAGCc -3'
miRNA:   3'- -AGCCU---CCGUUCGaGUAG----------CUGCGgUCG- -5'
18691 3' -56.1 NC_004682.1 + 37697 0.67 0.562835
Target:  5'- gCGGGcGGUcaagucccugaucGGGUUCAUCGGCGacuaCCAGCc -3'
miRNA:   3'- aGCCU-CCG-------------UUCGAGUAGCUGC----GGUCG- -5'
18691 3' -56.1 NC_004682.1 + 35517 0.67 0.563919
Target:  5'- -aGGAGGCAGGCgUCcuGUCGACGg-AGUa -3'
miRNA:   3'- agCCUCCGUUCG-AG--UAGCUGCggUCG- -5'
18691 3' -56.1 NC_004682.1 + 50042 0.67 0.563919
Target:  5'- cCGGAGcaGCAuGCUCAUCGGgacgGCCAcagGCa -3'
miRNA:   3'- aGCCUC--CGUuCGAGUAGCUg---CGGU---CG- -5'
18691 3' -56.1 NC_004682.1 + 5164 0.67 0.571524
Target:  5'- aCGGGGGUcggugcgggugcggGAGCagcCGgugCGGCGUCGGCg -3'
miRNA:   3'- aGCCUCCG--------------UUCGa--GUa--GCUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 5339 0.67 0.58571
Target:  5'- cUCGGuGGCccggAAGUcgUCGgacUCGugGCCGGUc -3'
miRNA:   3'- -AGCCuCCG----UUCG--AGU---AGCugCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 28284 0.67 0.596668
Target:  5'- aCGGcuGUcgaAAGCUgAUCGACGCC-GCc -3'
miRNA:   3'- aGCCucCG---UUCGAgUAGCUGCGGuCG- -5'
18691 3' -56.1 NC_004682.1 + 24443 0.67 0.606556
Target:  5'- gUUGGAGGCGAagacguacuugacGC-CGUCGACcacgcagcCCAGCu -3'
miRNA:   3'- -AGCCUCCGUU-------------CGaGUAGCUGc-------GGUCG- -5'
18691 3' -56.1 NC_004682.1 + 46332 0.66 0.618665
Target:  5'- cUCGGGcgcuGGCGAGCUgaCAUgGACGa-GGCg -3'
miRNA:   3'- -AGCCU----CCGUUCGA--GUAgCUGCggUCG- -5'
18691 3' -56.1 NC_004682.1 + 35312 0.66 0.629687
Target:  5'- cUCGG-GGCcgcugccguuGGCUCGgauguugaUCGACGUguGCg -3'
miRNA:   3'- -AGCCuCCGu---------UCGAGU--------AGCUGCGguCG- -5'
18691 3' -56.1 NC_004682.1 + 4918 0.66 0.651725
Target:  5'- aCGGAGGCGcgacccAGUUCAUgaCcACGCCguAGCc -3'
miRNA:   3'- aGCCUCCGU------UCGAGUA--GcUGCGG--UCG- -5'
18691 3' -56.1 NC_004682.1 + 23781 0.73 0.286635
Target:  5'- cUCGGucGCcAGCgacccgaagGUCGACGCCAGCc -3'
miRNA:   3'- -AGCCucCGuUCGag-------UAGCUGCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.