miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18691 3' -56.1 NC_004682.1 + 47231 0.66 0.658327
Target:  5'- aCGGAGGCcacaucgGAGCcaucgccgaagccaUCAuccgcauccUCGACGCCugAGCc -3'
miRNA:   3'- aGCCUCCG-------UUCG--------------AGU---------AGCUGCGG--UCG- -5'
18691 3' -56.1 NC_004682.1 + 40682 0.7 0.411072
Target:  5'- gUCGGcacgcGGCAcugcauggcucgGGC-CAUCGcCGCCGGCa -3'
miRNA:   3'- -AGCCu----CCGU------------UCGaGUAGCuGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 48457 0.7 0.392651
Target:  5'- aUGGGGGCGAuGCUCcUgGGCGaCCAGa -3'
miRNA:   3'- aGCCUCCGUU-CGAGuAgCUGC-GGUCg -5'
18691 3' -56.1 NC_004682.1 + 23781 0.73 0.286635
Target:  5'- cUCGGucGCcAGCgacccgaagGUCGACGCCAGCc -3'
miRNA:   3'- -AGCCucCGuUCGag-------UAGCUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 24443 0.67 0.606556
Target:  5'- gUUGGAGGCGAagacguacuugacGC-CGUCGACcacgcagcCCAGCu -3'
miRNA:   3'- -AGCCUCCGUU-------------CGaGUAGCUGc-------GGUCG- -5'
18691 3' -56.1 NC_004682.1 + 28284 0.67 0.596668
Target:  5'- aCGGcuGUcgaAAGCUgAUCGACGCC-GCc -3'
miRNA:   3'- aGCCucCG---UUCGAgUAGCUGCGGuCG- -5'
18691 3' -56.1 NC_004682.1 + 5164 0.67 0.571524
Target:  5'- aCGGGGGUcggugcgggugcggGAGCagcCGgugCGGCGUCGGCg -3'
miRNA:   3'- aGCCUCCG--------------UUCGa--GUa--GCUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 50042 0.67 0.563919
Target:  5'- cCGGAGcaGCAuGCUCAUCGGgacgGCCAcagGCa -3'
miRNA:   3'- aGCCUC--CGUuCGAGUAGCUg---CGGU---CG- -5'
18691 3' -56.1 NC_004682.1 + 47699 0.68 0.531666
Target:  5'- aUCGGccuggcugaAGGCAAGgUCuccgaggcCGGuCGCCAGCg -3'
miRNA:   3'- -AGCC---------UCCGUUCgAGua------GCU-GCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 31484 0.7 0.42906
Target:  5'- cUGGAGGaguugguCAAGCacuaCAUCGACGCCAa- -3'
miRNA:   3'- aGCCUCC-------GUUCGa---GUAGCUGCGGUcg -5'
18691 3' -56.1 NC_004682.1 + 12848 0.68 0.500103
Target:  5'- -gGGAGGCcGGUUUcggGGCGUCAGCg -3'
miRNA:   3'- agCCUCCGuUCGAGuagCUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 37697 0.67 0.562835
Target:  5'- gCGGGcGGUcaagucccugaucGGGUUCAUCGGCGacuaCCAGCc -3'
miRNA:   3'- aGCCU-CCG-------------UUCGAGUAGCUGC----GGUCG- -5'
18691 3' -56.1 NC_004682.1 + 4918 0.66 0.651725
Target:  5'- aCGGAGGCGcgacccAGUUCAUgaCcACGCCguAGCc -3'
miRNA:   3'- aGCCUCCGU------UCGAGUA--GcUGCGG--UCG- -5'
18691 3' -56.1 NC_004682.1 + 35623 0.69 0.479528
Target:  5'- gUCGGGGccaacuacaGCAaccGGUUCAUCGACuaCGGCc -3'
miRNA:   3'- -AGCCUC---------CGU---UCGAGUAGCUGcgGUCG- -5'
18691 3' -56.1 NC_004682.1 + 35312 0.66 0.629687
Target:  5'- cUCGG-GGCcgcugccguuGGCUCGgauguugaUCGACGUguGCg -3'
miRNA:   3'- -AGCCuCCGu---------UCGAGU--------AGCUGCGguCG- -5'
18691 3' -56.1 NC_004682.1 + 35517 0.67 0.563919
Target:  5'- -aGGAGGCAGGCgUCcuGUCGACGg-AGUa -3'
miRNA:   3'- agCCUCCGUUCG-AG--UAGCUGCggUCG- -5'
18691 3' -56.1 NC_004682.1 + 2215 0.69 0.439684
Target:  5'- cCGGuAGGUcccuGCUCGccuUCGGgGCCGGCu -3'
miRNA:   3'- aGCC-UCCGuu--CGAGU---AGCUgCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 44155 0.7 0.401794
Target:  5'- aCGGAGGCAGGCUUggaguUCcaccacCGCCuGCg -3'
miRNA:   3'- aGCCUCCGUUCGAGu----AGcu----GCGGuCG- -5'
18691 3' -56.1 NC_004682.1 + 46332 0.66 0.618665
Target:  5'- cUCGGGcgcuGGCGAGCUgaCAUgGACGa-GGCg -3'
miRNA:   3'- -AGCCU----CCGUUCGA--GUAgCUGCggUCG- -5'
18691 3' -56.1 NC_004682.1 + 5339 0.67 0.58571
Target:  5'- cUCGGuGGCccggAAGUcgUCGgacUCGugGCCGGUc -3'
miRNA:   3'- -AGCCuCCG----UUCG--AGU---AGCugCGGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.