miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18691 3' -56.1 NC_004682.1 + 22622 0.66 0.629687
Target:  5'- -aGGAGaaCGAGUUCAUgCuGCGCCAGUa -3'
miRNA:   3'- agCCUCc-GUUCGAGUA-GcUGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 27412 0.67 0.607656
Target:  5'- aCGGGcGGCAcaaucGC-CGUCGGCGCacuGGCg -3'
miRNA:   3'- aGCCU-CCGUu----CGaGUAGCUGCGg--UCG- -5'
18691 3' -56.1 NC_004682.1 + 27509 0.67 0.596668
Target:  5'- cUUGGAuGGUgccGCuugUCAUCGACGgCGGCg -3'
miRNA:   3'- -AGCCU-CCGuu-CG---AGUAGCUGCgGUCG- -5'
18691 3' -56.1 NC_004682.1 + 17553 0.67 0.596668
Target:  5'- cUGGGuacGGCucuGGCUCcuAUCGucacggcgcucACGCCAGCg -3'
miRNA:   3'- aGCCU---CCGu--UCGAG--UAGC-----------UGCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 34941 0.67 0.574791
Target:  5'- cCGGAGGaugcGGUUguUCGG-GCCAGCc -3'
miRNA:   3'- aGCCUCCgu--UCGAguAGCUgCGGUCG- -5'
18691 3' -56.1 NC_004682.1 + 6671 0.68 0.542349
Target:  5'- cCGGuGGCAGGCccagacUCGuacggcauccUCGAUGaCCGGCu -3'
miRNA:   3'- aGCCuCCGUUCG------AGU----------AGCUGC-GGUCG- -5'
18691 3' -56.1 NC_004682.1 + 33510 0.68 0.531666
Target:  5'- gCGG-GGCcAGCUUcgCGAaCGCCuGGCc -3'
miRNA:   3'- aGCCuCCGuUCGAGuaGCU-GCGG-UCG- -5'
18691 3' -56.1 NC_004682.1 + 32752 0.68 0.521059
Target:  5'- aUGGuGaCGAGUUCGUCGuACGCCucGGCg -3'
miRNA:   3'- aGCCuCcGUUCGAGUAGC-UGCGG--UCG- -5'
18691 3' -56.1 NC_004682.1 + 4619 0.68 0.521059
Target:  5'- cCGGAGGCcacGCUCGcugccgagaUCGAgGCCAu- -3'
miRNA:   3'- aGCCUCCGuu-CGAGU---------AGCUgCGGUcg -5'
18691 3' -56.1 NC_004682.1 + 7570 0.68 0.510536
Target:  5'- -aGGccGGCGGGCgCAUCGAgGCC-GCa -3'
miRNA:   3'- agCCu-CCGUUCGaGUAGCUgCGGuCG- -5'
18691 3' -56.1 NC_004682.1 + 13257 1.13 0.000387
Target:  5'- aUCGGAGGCAAGCUCAUCGACGCCAGCa -3'
miRNA:   3'- -AGCCUCCGUUCGAGUAGCUGCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.