miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18691 5' -58.6 NC_004682.1 + 36654 0.66 0.533348
Target:  5'- uGACCucGGCc--AGCGAGUACCgguaGCUGCc -3'
miRNA:   3'- uCUGG--CCGcucUCGCUCGUGG----UGACG- -5'
18691 5' -58.6 NC_004682.1 + 30320 0.66 0.532299
Target:  5'- uGACCGGgGAG-GCGcugauccGGCugCAUgagGCc -3'
miRNA:   3'- uCUGGCCgCUCuCGC-------UCGugGUGa--CG- -5'
18691 5' -58.6 NC_004682.1 + 27771 0.66 0.522899
Target:  5'- --uCCGGUGGcAGCGGa-ACCACUGCa -3'
miRNA:   3'- ucuGGCCGCUcUCGCUcgUGGUGACG- -5'
18691 5' -58.6 NC_004682.1 + 7670 0.66 0.519779
Target:  5'- aGGACCgggcGGCGAGAucaacgacggucacGCGAuGCACgGC-GCa -3'
miRNA:   3'- -UCUGG----CCGCUCU--------------CGCU-CGUGgUGaCG- -5'
18691 5' -58.6 NC_004682.1 + 31002 0.66 0.512529
Target:  5'- cGACCGGUugaucaagGAGGGCGA-C-CCGCUcGCc -3'
miRNA:   3'- uCUGGCCG--------CUCUCGCUcGuGGUGA-CG- -5'
18691 5' -58.6 NC_004682.1 + 44314 0.66 0.512529
Target:  5'- uAGACCGGgucGGAGUcuuGCACCaucggGCUGCg -3'
miRNA:   3'- -UCUGGCCgc-UCUCGcu-CGUGG-----UGACG- -5'
18691 5' -58.6 NC_004682.1 + 27517 0.66 0.502245
Target:  5'- aGGGCCGugaaCGAcAGCGAGaaCGCCAgUGCg -3'
miRNA:   3'- -UCUGGCc---GCUcUCGCUC--GUGGUgACG- -5'
18691 5' -58.6 NC_004682.1 + 30130 0.66 0.481956
Target:  5'- cGGCCaucaGGCGAGcGaucuccuGAGCGCCccACUGCg -3'
miRNA:   3'- uCUGG----CCGCUCuCg------CUCGUGG--UGACG- -5'
18691 5' -58.6 NC_004682.1 + 33002 0.66 0.481956
Target:  5'- uGACCGaGCuGGAGCGucaccGGCACCugUcGUu -3'
miRNA:   3'- uCUGGC-CGcUCUCGC-----UCGUGGugA-CG- -5'
18691 5' -58.6 NC_004682.1 + 4890 0.67 0.46109
Target:  5'- aGGGCuCGGUGAGcccgcgcuacucgGGCG-GCACCACg-- -3'
miRNA:   3'- -UCUG-GCCGCUC-------------UCGCuCGUGGUGacg -5'
18691 5' -58.6 NC_004682.1 + 10618 0.67 0.452294
Target:  5'- -cGCgGGUGGGcGCGAGUgGCCACUGg -3'
miRNA:   3'- ucUGgCCGCUCuCGCUCG-UGGUGACg -5'
18691 5' -58.6 NC_004682.1 + 46510 0.67 0.442629
Target:  5'- cAGGCgCGGCGGuAGCucuuGAGCugGCCGCUGg -3'
miRNA:   3'- -UCUG-GCCGCUcUCG----CUCG--UGGUGACg -5'
18691 5' -58.6 NC_004682.1 + 45988 0.67 0.423656
Target:  5'- aGGAcCCGGaCGAcGGCGAGC-CCGagUGCg -3'
miRNA:   3'- -UCU-GGCC-GCUcUCGCUCGuGGUg-ACG- -5'
18691 5' -58.6 NC_004682.1 + 5940 0.67 0.423656
Target:  5'- cGA-CGGCaAGGGCGAGCGCUgGCUGg -3'
miRNA:   3'- uCUgGCCGcUCUCGCUCGUGG-UGACg -5'
18691 5' -58.6 NC_004682.1 + 36318 0.68 0.405178
Target:  5'- cGGACUGGCGAGuGCcAGgGCCGuCgucGCg -3'
miRNA:   3'- -UCUGGCCGCUCuCGcUCgUGGU-Ga--CG- -5'
18691 5' -58.6 NC_004682.1 + 42261 0.68 0.405178
Target:  5'- gGGGCCGGgGuAGccAGCGcggugcauccgcAGCACgGCUGCc -3'
miRNA:   3'- -UCUGGCCgC-UC--UCGC------------UCGUGgUGACG- -5'
18691 5' -58.6 NC_004682.1 + 28841 0.68 0.405178
Target:  5'- cGGCCuGUGAGGGggagaCGAGCACCACc-- -3'
miRNA:   3'- uCUGGcCGCUCUC-----GCUCGUGGUGacg -5'
18691 5' -58.6 NC_004682.1 + 570 0.68 0.405178
Target:  5'- uAGGgCGGCGcGucGGUGAGCGCCGCcggaaGCg -3'
miRNA:   3'- -UCUgGCCGCuC--UCGCUCGUGGUGa----CG- -5'
18691 5' -58.6 NC_004682.1 + 29955 0.69 0.328613
Target:  5'- aGGuCUGGCGGGAGCGgguggagaAGCACCcCgaggGCc -3'
miRNA:   3'- -UCuGGCCGCUCUCGC--------UCGUGGuGa---CG- -5'
18691 5' -58.6 NC_004682.1 + 16238 0.7 0.313119
Target:  5'- uGAUggCGGCGAu-GCGAGCgACCGCUGg -3'
miRNA:   3'- uCUG--GCCGCUcuCGCUCG-UGGUGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.