miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18691 5' -58.6 NC_004682.1 + 13302 1.12 0.000258
Target:  5'- gAGACCGGCGAGAGCGAGCACCACUGCg -3'
miRNA:   3'- -UCUGGCCGCUCUCGCUCGUGGUGACG- -5'
18691 5' -58.6 NC_004682.1 + 48095 0.81 0.053754
Target:  5'- cAGGCCGGUGAcGGCGAGCAUCACUc- -3'
miRNA:   3'- -UCUGGCCGCUcUCGCUCGUGGUGAcg -5'
18691 5' -58.6 NC_004682.1 + 31904 0.75 0.143652
Target:  5'- gAGcACCGGCauGAGGucGCGGGCACCACgGUa -3'
miRNA:   3'- -UC-UGGCCG--CUCU--CGCUCGUGGUGaCG- -5'
18691 5' -58.6 NC_004682.1 + 37608 0.74 0.151681
Target:  5'- cGGcCCGGUG-GAGCaaGGGCACCGCUGa -3'
miRNA:   3'- -UCuGGCCGCuCUCG--CUCGUGGUGACg -5'
18691 5' -58.6 NC_004682.1 + 11817 0.74 0.168971
Target:  5'- uGGACCGGCGAGGcCGAGCGCaa--GCc -3'
miRNA:   3'- -UCUGGCCGCUCUcGCUCGUGgugaCG- -5'
18691 5' -58.6 NC_004682.1 + 45560 0.72 0.211097
Target:  5'- gGGGCCGGCguGAGcagcagccccagcgcGGCGAGCAUgGCgGCg -3'
miRNA:   3'- -UCUGGCCG--CUC---------------UCGCUCGUGgUGaCG- -5'
18691 5' -58.6 NC_004682.1 + 40751 0.72 0.233567
Target:  5'- uGGACCGGCcAGcccgacuGGCGGGCACCccacgcccaucgguCUGCg -3'
miRNA:   3'- -UCUGGCCGcUC-------UCGCUCGUGGu-------------GACG- -5'
18691 5' -58.6 NC_004682.1 + 1464 0.71 0.269986
Target:  5'- aGGACCaGCGAGucgcugucgaGGCGGGUACCAaUGUc -3'
miRNA:   3'- -UCUGGcCGCUC----------UCGCUCGUGGUgACG- -5'
18691 5' -58.6 NC_004682.1 + 49331 0.7 0.283809
Target:  5'- gAGACgGGUGAGcGgGAGUACCGCg-- -3'
miRNA:   3'- -UCUGgCCGCUCuCgCUCGUGGUGacg -5'
18691 5' -58.6 NC_004682.1 + 7432 0.7 0.283809
Target:  5'- gGGGCCGcagaguuccGCGAGcGaGAGCGCgGCUGCg -3'
miRNA:   3'- -UCUGGC---------CGCUCuCgCUCGUGgUGACG- -5'
18691 5' -58.6 NC_004682.1 + 20176 0.7 0.304836
Target:  5'- cAGACCGGCGaAGucgucaccAGUGAaugacacGCGCCACgGCu -3'
miRNA:   3'- -UCUGGCCGC-UC--------UCGCU-------CGUGGUGaCG- -5'
18691 5' -58.6 NC_004682.1 + 27255 0.7 0.305582
Target:  5'- gAGACCGGCGcGaAGUGGGuCGCCGa-GCa -3'
miRNA:   3'- -UCUGGCCGCuC-UCGCUC-GUGGUgaCG- -5'
18691 5' -58.6 NC_004682.1 + 16238 0.7 0.313119
Target:  5'- uGAUggCGGCGAu-GCGAGCgACCGCUGg -3'
miRNA:   3'- uCUG--GCCGCUcuCGCUCG-UGGUGACg -5'
18691 5' -58.6 NC_004682.1 + 29955 0.69 0.328613
Target:  5'- aGGuCUGGCGGGAGCGgguggagaAGCACCcCgaggGCc -3'
miRNA:   3'- -UCuGGCCGCUCUCGC--------UCGUGGuGa---CG- -5'
18691 5' -58.6 NC_004682.1 + 42261 0.68 0.405178
Target:  5'- gGGGCCGGgGuAGccAGCGcggugcauccgcAGCACgGCUGCc -3'
miRNA:   3'- -UCUGGCCgC-UC--UCGC------------UCGUGgUGACG- -5'
18691 5' -58.6 NC_004682.1 + 28841 0.68 0.405178
Target:  5'- cGGCCuGUGAGGGggagaCGAGCACCACc-- -3'
miRNA:   3'- uCUGGcCGCUCUC-----GCUCGUGGUGacg -5'
18691 5' -58.6 NC_004682.1 + 570 0.68 0.405178
Target:  5'- uAGGgCGGCGcGucGGUGAGCGCCGCcggaaGCg -3'
miRNA:   3'- -UCUgGCCGCuC--UCGCUCGUGGUGa----CG- -5'
18691 5' -58.6 NC_004682.1 + 36318 0.68 0.405178
Target:  5'- cGGACUGGCGAGuGCcAGgGCCGuCgucGCg -3'
miRNA:   3'- -UCUGGCCGCUCuCGcUCgUGGU-Ga--CG- -5'
18691 5' -58.6 NC_004682.1 + 45988 0.67 0.423656
Target:  5'- aGGAcCCGGaCGAcGGCGAGC-CCGagUGCg -3'
miRNA:   3'- -UCU-GGCC-GCUcUCGCUCGuGGUg-ACG- -5'
18691 5' -58.6 NC_004682.1 + 5940 0.67 0.423656
Target:  5'- cGA-CGGCaAGGGCGAGCGCUgGCUGg -3'
miRNA:   3'- uCUgGCCGcUCUCGCUCGUGG-UGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.