Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18691 | 5' | -58.6 | NC_004682.1 | + | 570 | 0.68 | 0.405178 |
Target: 5'- uAGGgCGGCGcGucGGUGAGCGCCGCcggaaGCg -3' miRNA: 3'- -UCUgGCCGCuC--UCGCUCGUGGUGa----CG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 1464 | 0.71 | 0.269986 |
Target: 5'- aGGACCaGCGAGucgcugucgaGGCGGGUACCAaUGUc -3' miRNA: 3'- -UCUGGcCGCUC----------UCGCUCGUGGUgACG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 4890 | 0.67 | 0.46109 |
Target: 5'- aGGGCuCGGUGAGcccgcgcuacucgGGCG-GCACCACg-- -3' miRNA: 3'- -UCUG-GCCGCUC-------------UCGCuCGUGGUGacg -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 5940 | 0.67 | 0.423656 |
Target: 5'- cGA-CGGCaAGGGCGAGCGCUgGCUGg -3' miRNA: 3'- uCUgGCCGcUCUCGCUCGUGG-UGACg -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 7432 | 0.7 | 0.283809 |
Target: 5'- gGGGCCGcagaguuccGCGAGcGaGAGCGCgGCUGCg -3' miRNA: 3'- -UCUGGC---------CGCUCuCgCUCGUGgUGACG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 7670 | 0.66 | 0.519779 |
Target: 5'- aGGACCgggcGGCGAGAucaacgacggucacGCGAuGCACgGC-GCa -3' miRNA: 3'- -UCUGG----CCGCUCU--------------CGCU-CGUGgUGaCG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 10618 | 0.67 | 0.452294 |
Target: 5'- -cGCgGGUGGGcGCGAGUgGCCACUGg -3' miRNA: 3'- ucUGgCCGCUCuCGCUCG-UGGUGACg -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 11817 | 0.74 | 0.168971 |
Target: 5'- uGGACCGGCGAGGcCGAGCGCaa--GCc -3' miRNA: 3'- -UCUGGCCGCUCUcGCUCGUGgugaCG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 13302 | 1.12 | 0.000258 |
Target: 5'- gAGACCGGCGAGAGCGAGCACCACUGCg -3' miRNA: 3'- -UCUGGCCGCUCUCGCUCGUGGUGACG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 16238 | 0.7 | 0.313119 |
Target: 5'- uGAUggCGGCGAu-GCGAGCgACCGCUGg -3' miRNA: 3'- uCUG--GCCGCUcuCGCUCG-UGGUGACg -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 20176 | 0.7 | 0.304836 |
Target: 5'- cAGACCGGCGaAGucgucaccAGUGAaugacacGCGCCACgGCu -3' miRNA: 3'- -UCUGGCCGC-UC--------UCGCU-------CGUGGUGaCG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 27255 | 0.7 | 0.305582 |
Target: 5'- gAGACCGGCGcGaAGUGGGuCGCCGa-GCa -3' miRNA: 3'- -UCUGGCCGCuC-UCGCUC-GUGGUgaCG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 27517 | 0.66 | 0.502245 |
Target: 5'- aGGGCCGugaaCGAcAGCGAGaaCGCCAgUGCg -3' miRNA: 3'- -UCUGGCc---GCUcUCGCUC--GUGGUgACG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 27771 | 0.66 | 0.522899 |
Target: 5'- --uCCGGUGGcAGCGGa-ACCACUGCa -3' miRNA: 3'- ucuGGCCGCUcUCGCUcgUGGUGACG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 28841 | 0.68 | 0.405178 |
Target: 5'- cGGCCuGUGAGGGggagaCGAGCACCACc-- -3' miRNA: 3'- uCUGGcCGCUCUC-----GCUCGUGGUGacg -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 29955 | 0.69 | 0.328613 |
Target: 5'- aGGuCUGGCGGGAGCGgguggagaAGCACCcCgaggGCc -3' miRNA: 3'- -UCuGGCCGCUCUCGC--------UCGUGGuGa---CG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 30130 | 0.66 | 0.481956 |
Target: 5'- cGGCCaucaGGCGAGcGaucuccuGAGCGCCccACUGCg -3' miRNA: 3'- uCUGG----CCGCUCuCg------CUCGUGG--UGACG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 30320 | 0.66 | 0.532299 |
Target: 5'- uGACCGGgGAG-GCGcugauccGGCugCAUgagGCc -3' miRNA: 3'- uCUGGCCgCUCuCGC-------UCGugGUGa--CG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 31002 | 0.66 | 0.512529 |
Target: 5'- cGACCGGUugaucaagGAGGGCGA-C-CCGCUcGCc -3' miRNA: 3'- uCUGGCCG--------CUCUCGCUcGuGGUGA-CG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 31904 | 0.75 | 0.143652 |
Target: 5'- gAGcACCGGCauGAGGucGCGGGCACCACgGUa -3' miRNA: 3'- -UC-UGGCCG--CUCU--CGCUCGUGGUGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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