miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18691 5' -58.6 NC_004682.1 + 13302 1.12 0.000258
Target:  5'- gAGACCGGCGAGAGCGAGCACCACUGCg -3'
miRNA:   3'- -UCUGGCCGCUCUCGCUCGUGGUGACG- -5'
18691 5' -58.6 NC_004682.1 + 36654 0.66 0.533348
Target:  5'- uGACCucGGCc--AGCGAGUACCgguaGCUGCc -3'
miRNA:   3'- uCUGG--CCGcucUCGCUCGUGG----UGACG- -5'
18691 5' -58.6 NC_004682.1 + 27771 0.66 0.522899
Target:  5'- --uCCGGUGGcAGCGGa-ACCACUGCa -3'
miRNA:   3'- ucuGGCCGCUcUCGCUcgUGGUGACG- -5'
18691 5' -58.6 NC_004682.1 + 7670 0.66 0.519779
Target:  5'- aGGACCgggcGGCGAGAucaacgacggucacGCGAuGCACgGC-GCa -3'
miRNA:   3'- -UCUGG----CCGCUCU--------------CGCU-CGUGgUGaCG- -5'
18691 5' -58.6 NC_004682.1 + 44314 0.66 0.512529
Target:  5'- uAGACCGGgucGGAGUcuuGCACCaucggGCUGCg -3'
miRNA:   3'- -UCUGGCCgc-UCUCGcu-CGUGG-----UGACG- -5'
18691 5' -58.6 NC_004682.1 + 30130 0.66 0.481956
Target:  5'- cGGCCaucaGGCGAGcGaucuccuGAGCGCCccACUGCg -3'
miRNA:   3'- uCUGG----CCGCUCuCg------CUCGUGG--UGACG- -5'
18691 5' -58.6 NC_004682.1 + 4890 0.67 0.46109
Target:  5'- aGGGCuCGGUGAGcccgcgcuacucgGGCG-GCACCACg-- -3'
miRNA:   3'- -UCUG-GCCGCUC-------------UCGCuCGUGGUGacg -5'
18691 5' -58.6 NC_004682.1 + 10618 0.67 0.452294
Target:  5'- -cGCgGGUGGGcGCGAGUgGCCACUGg -3'
miRNA:   3'- ucUGgCCGCUCuCGCUCG-UGGUGACg -5'
18691 5' -58.6 NC_004682.1 + 46510 0.67 0.442629
Target:  5'- cAGGCgCGGCGGuAGCucuuGAGCugGCCGCUGg -3'
miRNA:   3'- -UCUG-GCCGCUcUCG----CUCG--UGGUGACg -5'
18691 5' -58.6 NC_004682.1 + 5940 0.67 0.423656
Target:  5'- cGA-CGGCaAGGGCGAGCGCUgGCUGg -3'
miRNA:   3'- uCUgGCCGcUCUCGCUCGUGG-UGACg -5'
18691 5' -58.6 NC_004682.1 + 48095 0.81 0.053754
Target:  5'- cAGGCCGGUGAcGGCGAGCAUCACUc- -3'
miRNA:   3'- -UCUGGCCGCUcUCGCUCGUGGUGAcg -5'
18691 5' -58.6 NC_004682.1 + 11817 0.74 0.168971
Target:  5'- uGGACCGGCGAGGcCGAGCGCaa--GCc -3'
miRNA:   3'- -UCUGGCCGCUCUcGCUCGUGgugaCG- -5'
18691 5' -58.6 NC_004682.1 + 45560 0.72 0.211097
Target:  5'- gGGGCCGGCguGAGcagcagccccagcgcGGCGAGCAUgGCgGCg -3'
miRNA:   3'- -UCUGGCCG--CUC---------------UCGCUCGUGgUGaCG- -5'
18691 5' -58.6 NC_004682.1 + 40751 0.72 0.233567
Target:  5'- uGGACCGGCcAGcccgacuGGCGGGCACCccacgcccaucgguCUGCg -3'
miRNA:   3'- -UCUGGCCGcUC-------UCGCUCGUGGu-------------GACG- -5'
18691 5' -58.6 NC_004682.1 + 16238 0.7 0.313119
Target:  5'- uGAUggCGGCGAu-GCGAGCgACCGCUGg -3'
miRNA:   3'- uCUG--GCCGCUcuCGCUCG-UGGUGACg -5'
18691 5' -58.6 NC_004682.1 + 42261 0.68 0.405178
Target:  5'- gGGGCCGGgGuAGccAGCGcggugcauccgcAGCACgGCUGCc -3'
miRNA:   3'- -UCUGGCCgC-UC--UCGC------------UCGUGgUGACG- -5'
18691 5' -58.6 NC_004682.1 + 36318 0.68 0.405178
Target:  5'- cGGACUGGCGAGuGCcAGgGCCGuCgucGCg -3'
miRNA:   3'- -UCUGGCCGCUCuCGcUCgUGGU-Ga--CG- -5'
18691 5' -58.6 NC_004682.1 + 31904 0.75 0.143652
Target:  5'- gAGcACCGGCauGAGGucGCGGGCACCACgGUa -3'
miRNA:   3'- -UC-UGGCCG--CUCU--CGCUCGUGGUGaCG- -5'
18691 5' -58.6 NC_004682.1 + 31002 0.66 0.512529
Target:  5'- cGACCGGUugaucaagGAGGGCGA-C-CCGCUcGCc -3'
miRNA:   3'- uCUGGCCG--------CUCUCGCUcGuGGUGA-CG- -5'
18691 5' -58.6 NC_004682.1 + 27517 0.66 0.502245
Target:  5'- aGGGCCGugaaCGAcAGCGAGaaCGCCAgUGCg -3'
miRNA:   3'- -UCUGGCc---GCUcUCGCUC--GUGGUgACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.