Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18691 | 5' | -58.6 | NC_004682.1 | + | 49331 | 0.7 | 0.283809 |
Target: 5'- gAGACgGGUGAGcGgGAGUACCGCg-- -3' miRNA: 3'- -UCUGgCCGCUCuCgCUCGUGGUGacg -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 1464 | 0.71 | 0.269986 |
Target: 5'- aGGACCaGCGAGucgcugucgaGGCGGGUACCAaUGUc -3' miRNA: 3'- -UCUGGcCGCUC----------UCGCUCGUGGUgACG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 37608 | 0.74 | 0.151681 |
Target: 5'- cGGcCCGGUG-GAGCaaGGGCACCGCUGa -3' miRNA: 3'- -UCuGGCCGCuCUCG--CUCGUGGUGACg -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 29955 | 0.69 | 0.328613 |
Target: 5'- aGGuCUGGCGGGAGCGgguggagaAGCACCcCgaggGCc -3' miRNA: 3'- -UCuGGCCGCUCUCGC--------UCGUGGuGa---CG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 28841 | 0.68 | 0.405178 |
Target: 5'- cGGCCuGUGAGGGggagaCGAGCACCACc-- -3' miRNA: 3'- uCUGGcCGCUCUC-----GCUCGUGGUGacg -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 570 | 0.68 | 0.405178 |
Target: 5'- uAGGgCGGCGcGucGGUGAGCGCCGCcggaaGCg -3' miRNA: 3'- -UCUgGCCGCuC--UCGCUCGUGGUGa----CG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 45988 | 0.67 | 0.423656 |
Target: 5'- aGGAcCCGGaCGAcGGCGAGC-CCGagUGCg -3' miRNA: 3'- -UCU-GGCC-GCUcUCGCUCGuGGUg-ACG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 33002 | 0.66 | 0.481956 |
Target: 5'- uGACCGaGCuGGAGCGucaccGGCACCugUcGUu -3' miRNA: 3'- uCUGGC-CGcUCUCGC-----UCGUGGugA-CG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 27517 | 0.66 | 0.502245 |
Target: 5'- aGGGCCGugaaCGAcAGCGAGaaCGCCAgUGCg -3' miRNA: 3'- -UCUGGCc---GCUcUCGCUC--GUGGUgACG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 31002 | 0.66 | 0.512529 |
Target: 5'- cGACCGGUugaucaagGAGGGCGA-C-CCGCUcGCc -3' miRNA: 3'- uCUGGCCG--------CUCUCGCUcGuGGUGA-CG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 30320 | 0.66 | 0.532299 |
Target: 5'- uGACCGGgGAG-GCGcugauccGGCugCAUgagGCc -3' miRNA: 3'- uCUGGCCgCUCuCGC-------UCGugGUGa--CG- -5' |
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18691 | 5' | -58.6 | NC_004682.1 | + | 31904 | 0.75 | 0.143652 |
Target: 5'- gAGcACCGGCauGAGGucGCGGGCACCACgGUa -3' miRNA: 3'- -UC-UGGCCG--CUCU--CGCUCGUGGUGaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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