miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18692 3' -56.9 NC_004682.1 + 38438 0.66 0.642107
Target:  5'- cUCGCgGACGGGGACGaGCcggGGCugCa-- -3'
miRNA:   3'- -AGUGgCUGCUCCUGC-CG---UUGugGguc -5'
18692 3' -56.9 NC_004682.1 + 21257 0.66 0.642107
Target:  5'- uUCGCCGugGAGGuaGCGcCGACACaCGa -3'
miRNA:   3'- -AGUGGCugCUCC--UGCcGUUGUGgGUc -5'
18692 3' -56.9 NC_004682.1 + 1926 0.66 0.631223
Target:  5'- --cCCGAUGGGGcCGGgGagcccgagcagACGCCCGGa -3'
miRNA:   3'- aguGGCUGCUCCuGCCgU-----------UGUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 43604 0.66 0.624693
Target:  5'- aCAgCGACGgcaacgugaucguccGGGAcuacaagacCGGCAACACCCc- -3'
miRNA:   3'- aGUgGCUGC---------------UCCU---------GCCGUUGUGGGuc -5'
18692 3' -56.9 NC_004682.1 + 23163 0.66 0.623604
Target:  5'- gCACCGaugguuGCGGGGAUcgucaggaucgcguaGGCGACcagguccACCCAGu -3'
miRNA:   3'- aGUGGC------UGCUCCUG---------------CCGUUG-------UGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 46571 0.66 0.62034
Target:  5'- cCGCCG-CGccuGGAUcgcaGGCuuCGCCCAGa -3'
miRNA:   3'- aGUGGCuGCu--CCUG----CCGuuGUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 21389 0.66 0.62034
Target:  5'- aCAUCGcaucGGACGGCAugACCgAGg -3'
miRNA:   3'- aGUGGCugcuCCUGCCGUugUGGgUC- -5'
18692 3' -56.9 NC_004682.1 + 1378 0.67 0.576997
Target:  5'- -aACCGGagaGGGGACGGCucGAC-CCCu- -3'
miRNA:   3'- agUGGCUg--CUCCUGCCG--UUGuGGGuc -5'
18692 3' -56.9 NC_004682.1 + 44796 0.67 0.555559
Target:  5'- cCACCGGCGGcGuCGGCA-UGCCCGa -3'
miRNA:   3'- aGUGGCUGCUcCuGCCGUuGUGGGUc -5'
18692 3' -56.9 NC_004682.1 + 34870 0.67 0.544926
Target:  5'- cUCcCCGACGuuGGACaGCGACGaguUCCAGa -3'
miRNA:   3'- -AGuGGCUGCu-CCUGcCGUUGU---GGGUC- -5'
18692 3' -56.9 NC_004682.1 + 35464 0.67 0.544926
Target:  5'- gUCAUCGaggacucccGCGAGGGCugGGCGGCugCCc- -3'
miRNA:   3'- -AGUGGC---------UGCUCCUG--CCGUUGugGGuc -5'
18692 3' -56.9 NC_004682.1 + 32245 0.67 0.538578
Target:  5'- gUCAcCCGGCGAGGucaacaccaugcGCcugaugaagcgagcuGGCuuCACCCAGg -3'
miRNA:   3'- -AGU-GGCUGCUCC------------UG---------------CCGuuGUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 13270 0.67 0.53436
Target:  5'- aUCACCGucauGCGAGaucuGCGGUA--GCCCAGg -3'
miRNA:   3'- -AGUGGC----UGCUCc---UGCCGUugUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 36404 0.68 0.523866
Target:  5'- gUCACCcGCGAcGACGGCccuGGCACUCGc -3'
miRNA:   3'- -AGUGGcUGCUcCUGCCG---UUGUGGGUc -5'
18692 3' -56.9 NC_004682.1 + 4317 0.68 0.523866
Target:  5'- aUCGCUGACGAGuuCGGCAAgcacguugagcCGCUCAc -3'
miRNA:   3'- -AGUGGCUGCUCcuGCCGUU-----------GUGGGUc -5'
18692 3' -56.9 NC_004682.1 + 35036 0.68 0.513453
Target:  5'- -gGCCGugGAGGAaGGCuggGCugGCCCGa -3'
miRNA:   3'- agUGGCugCUCCUgCCGu--UG--UGGGUc -5'
18692 3' -56.9 NC_004682.1 + 23901 0.68 0.513453
Target:  5'- gCACCGGCcacacccccGAGGACG-CGGCugCCGc -3'
miRNA:   3'- aGUGGCUG---------CUCCUGCcGUUGugGGUc -5'
18692 3' -56.9 NC_004682.1 + 46137 0.68 0.513453
Target:  5'- gCAgCGcCGAGcGACaGCAGCACCgAGg -3'
miRNA:   3'- aGUgGCuGCUC-CUGcCGUUGUGGgUC- -5'
18692 3' -56.9 NC_004682.1 + 20779 0.68 0.503125
Target:  5'- cUACCGggugguccGCGAGGAgaaCGGCGACugCUAc -3'
miRNA:   3'- aGUGGC--------UGCUCCU---GCCGUUGugGGUc -5'
18692 3' -56.9 NC_004682.1 + 32675 0.68 0.492889
Target:  5'- cCGCUGGCauGAGG-CGGCuGACGCCgAGa -3'
miRNA:   3'- aGUGGCUG--CUCCuGCCG-UUGUGGgUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.