Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 18692 | 3' | -56.9 | NC_004682.1 | + | 21389 | 0.66 | 0.62034 |
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Target: 5'- aCAUCGcaucGGACGGCAugACCgAGg -3' miRNA: 3'- aGUGGCugcuCCUGCCGUugUGGgUC- -5' |
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| 18692 | 3' | -56.9 | NC_004682.1 | + | 46571 | 0.66 | 0.62034 |
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Target: 5'- cCGCCG-CGccuGGAUcgcaGGCuuCGCCCAGa -3' miRNA: 3'- aGUGGCuGCu--CCUG----CCGuuGUGGGUC- -5' |
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| 18692 | 3' | -56.9 | NC_004682.1 | + | 23163 | 0.66 | 0.623604 |
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Target: 5'- gCACCGaugguuGCGGGGAUcgucaggaucgcguaGGCGACcagguccACCCAGu -3' miRNA: 3'- aGUGGC------UGCUCCUG---------------CCGUUG-------UGGGUC- -5' |
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| 18692 | 3' | -56.9 | NC_004682.1 | + | 43604 | 0.66 | 0.624693 |
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Target: 5'- aCAgCGACGgcaacgugaucguccGGGAcuacaagacCGGCAACACCCc- -3' miRNA: 3'- aGUgGCUGC---------------UCCU---------GCCGUUGUGGGuc -5' |
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| 18692 | 3' | -56.9 | NC_004682.1 | + | 1926 | 0.66 | 0.631223 |
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Target: 5'- --cCCGAUGGGGcCGGgGagcccgagcagACGCCCGGa -3' miRNA: 3'- aguGGCUGCUCCuGCCgU-----------UGUGGGUC- -5' |
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| 18692 | 3' | -56.9 | NC_004682.1 | + | 38438 | 0.66 | 0.642107 |
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Target: 5'- cUCGCgGACGGGGACGaGCcggGGCugCa-- -3' miRNA: 3'- -AGUGgCUGCUCCUGC-CG---UUGugGguc -5' |
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| 18692 | 3' | -56.9 | NC_004682.1 | + | 21257 | 0.66 | 0.642107 |
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Target: 5'- uUCGCCGugGAGGuaGCGcCGACACaCGa -3' miRNA: 3'- -AGUGGCugCUCC--UGCcGUUGUGgGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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