miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18692 3' -56.9 NC_004682.1 + 6506 0.68 0.492889
Target:  5'- gCACCGuccaugauCGAGGAccacauCGGgAACGCCCGa -3'
miRNA:   3'- aGUGGCu-------GCUCCU------GCCgUUGUGGGUc -5'
18692 3' -56.9 NC_004682.1 + 32675 0.68 0.492889
Target:  5'- cCGCUGGCauGAGG-CGGCuGACGCCgAGa -3'
miRNA:   3'- aGUGGCUG--CUCCuGCCG-UUGUGGgUC- -5'
18692 3' -56.9 NC_004682.1 + 19927 0.68 0.491871
Target:  5'- cCACCGAUGAGGccaGGCAuucggauGCGCCg-- -3'
miRNA:   3'- aGUGGCUGCUCCug-CCGU-------UGUGGguc -5'
18692 3' -56.9 NC_004682.1 + 22583 0.68 0.490853
Target:  5'- -aGCCGAUGAGGcuuccugacguuCGGCAACugACUCAGc -3'
miRNA:   3'- agUGGCUGCUCCu-----------GCCGUUG--UGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 3135 0.68 0.48275
Target:  5'- aUCACUGGCGcAGG-CGGCGcaGCAgCCGc -3'
miRNA:   3'- -AGUGGCUGC-UCCuGCCGU--UGUgGGUc -5'
18692 3' -56.9 NC_004682.1 + 9306 0.68 0.48275
Target:  5'- -aACCG-CGAGGACGGCcaguGgGUCCAGg -3'
miRNA:   3'- agUGGCuGCUCCUGCCGu---UgUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 29101 0.68 0.472712
Target:  5'- --gUCGGCGGGGuCGGCuucgagcuuCGCCCGGa -3'
miRNA:   3'- aguGGCUGCUCCuGCCGuu-------GUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 42535 0.68 0.472712
Target:  5'- aC-CCGACGuGGcuCGGCGGCGCCUc- -3'
miRNA:   3'- aGuGGCUGCuCCu-GCCGUUGUGGGuc -5'
18692 3' -56.9 NC_004682.1 + 40231 0.68 0.472712
Target:  5'- -gGCCGACGAacACGGCcuggucAAUGCCCAGu -3'
miRNA:   3'- agUGGCUGCUccUGCCG------UUGUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 30772 0.68 0.471714
Target:  5'- -gGCCGACGAGGGCcaauugauGGCcucagucGACuaccagGCCCAGg -3'
miRNA:   3'- agUGGCUGCUCCUG--------CCG-------UUG------UGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 22642 0.69 0.452959
Target:  5'- cUCAUCGGCuucGGGGcCGGCGuguccuucgACACCCAa -3'
miRNA:   3'- -AGUGGCUG---CUCCuGCCGU---------UGUGGGUc -5'
18692 3' -56.9 NC_004682.1 + 28770 0.7 0.405643
Target:  5'- cCGCCGccGCGAguGGGCGGCAucgGCACgCCGa -3'
miRNA:   3'- aGUGGC--UGCU--CCUGCCGU---UGUG-GGUc -5'
18692 3' -56.9 NC_004682.1 + 13584 0.7 0.387606
Target:  5'- -uGCCGACGuaccGGACuGGCcuuGCACCUGGa -3'
miRNA:   3'- agUGGCUGCu---CCUG-CCGu--UGUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 2691 0.71 0.353151
Target:  5'- gCACCGugccguuCGAGGACGG-GACGCCUg- -3'
miRNA:   3'- aGUGGCu------GCUCCUGCCgUUGUGGGuc -5'
18692 3' -56.9 NC_004682.1 + 47251 0.71 0.344883
Target:  5'- cCGCCGACGAGG-CGGCAccgacggaggccACAUCgGa -3'
miRNA:   3'- aGUGGCUGCUCCuGCCGU------------UGUGGgUc -5'
18692 3' -56.9 NC_004682.1 + 159 0.71 0.32092
Target:  5'- gUCGCCcGCGAGGGCGGCucugaGCCUc- -3'
miRNA:   3'- -AGUGGcUGCUCCUGCCGuug--UGGGuc -5'
18692 3' -56.9 NC_004682.1 + 20922 0.72 0.313214
Target:  5'- gCACCaGACGAGGAUGuGCuuCGCCUg- -3'
miRNA:   3'- aGUGG-CUGCUCCUGC-CGuuGUGGGuc -5'
18692 3' -56.9 NC_004682.1 + 25261 0.72 0.305649
Target:  5'- cCACCG-CGucaAGGcccACGGCGugGCCCAGu -3'
miRNA:   3'- aGUGGCuGC---UCC---UGCCGUugUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 25003 0.72 0.290221
Target:  5'- aCGCCGACucGG-CGGCAucugcucGCAUCCAGg -3'
miRNA:   3'- aGUGGCUGcuCCuGCCGU-------UGUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 44 0.72 0.276794
Target:  5'- --uUCGAUGGGGAUGGacACGCCCAGg -3'
miRNA:   3'- aguGGCUGCUCCUGCCguUGUGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.