Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18692 | 3' | -56.9 | NC_004682.1 | + | 26772 | 0.68 | 0.492889 |
Target: 5'- aCACCGAuccCGAGGGCaaGGCGAU-CCUGGa -3' miRNA: 3'- aGUGGCU---GCUCCUG--CCGUUGuGGGUC- -5' |
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18692 | 3' | -56.9 | NC_004682.1 | + | 25942 | 0.74 | 0.225668 |
Target: 5'- aCGCCGACGAguGGACcaaGGcCAGCACcCCGGa -3' miRNA: 3'- aGUGGCUGCU--CCUG---CC-GUUGUG-GGUC- -5' |
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18692 | 3' | -56.9 | NC_004682.1 | + | 25261 | 0.72 | 0.305649 |
Target: 5'- cCACCG-CGucaAGGcccACGGCGugGCCCAGu -3' miRNA: 3'- aGUGGCuGC---UCC---UGCCGUugUGGGUC- -5' |
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18692 | 3' | -56.9 | NC_004682.1 | + | 25003 | 0.72 | 0.290221 |
Target: 5'- aCGCCGACucGG-CGGCAucugcucGCAUCCAGg -3' miRNA: 3'- aGUGGCUGcuCCuGCCGU-------UGUGGGUC- -5' |
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18692 | 3' | -56.9 | NC_004682.1 | + | 23901 | 0.68 | 0.513453 |
Target: 5'- gCACCGGCcacacccccGAGGACG-CGGCugCCGc -3' miRNA: 3'- aGUGGCUG---------CUCCUGCcGUUGugGGUc -5' |
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18692 | 3' | -56.9 | NC_004682.1 | + | 23163 | 0.66 | 0.623604 |
Target: 5'- gCACCGaugguuGCGGGGAUcgucaggaucgcguaGGCGACcagguccACCCAGu -3' miRNA: 3'- aGUGGC------UGCUCCUG---------------CCGUUG-------UGGGUC- -5' |
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18692 | 3' | -56.9 | NC_004682.1 | + | 22642 | 0.69 | 0.452959 |
Target: 5'- cUCAUCGGCuucGGGGcCGGCGuguccuucgACACCCAa -3' miRNA: 3'- -AGUGGCUG---CUCCuGCCGU---------UGUGGGUc -5' |
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18692 | 3' | -56.9 | NC_004682.1 | + | 22583 | 0.68 | 0.490853 |
Target: 5'- -aGCCGAUGAGGcuuccugacguuCGGCAACugACUCAGc -3' miRNA: 3'- agUGGCUGCUCCu-----------GCCGUUG--UGGGUC- -5' |
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18692 | 3' | -56.9 | NC_004682.1 | + | 22447 | 0.76 | 0.168647 |
Target: 5'- cUUGCUGAUGAGGACGGaAACAUCCAc -3' miRNA: 3'- -AGUGGCUGCUCCUGCCgUUGUGGGUc -5' |
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18692 | 3' | -56.9 | NC_004682.1 | + | 21389 | 0.66 | 0.62034 |
Target: 5'- aCAUCGcaucGGACGGCAugACCgAGg -3' miRNA: 3'- aGUGGCugcuCCUGCCGUugUGGgUC- -5' |
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18692 | 3' | -56.9 | NC_004682.1 | + | 21257 | 0.66 | 0.642107 |
Target: 5'- uUCGCCGugGAGGuaGCGcCGACACaCGa -3' miRNA: 3'- -AGUGGCugCUCC--UGCcGUUGUGgGUc -5' |
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18692 | 3' | -56.9 | NC_004682.1 | + | 20922 | 0.72 | 0.313214 |
Target: 5'- gCACCaGACGAGGAUGuGCuuCGCCUg- -3' miRNA: 3'- aGUGG-CUGCUCCUGC-CGuuGUGGGuc -5' |
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18692 | 3' | -56.9 | NC_004682.1 | + | 20779 | 0.68 | 0.503125 |
Target: 5'- cUACCGggugguccGCGAGGAgaaCGGCGACugCUAc -3' miRNA: 3'- aGUGGC--------UGCUCCU---GCCGUUGugGGUc -5' |
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18692 | 3' | -56.9 | NC_004682.1 | + | 19927 | 0.68 | 0.491871 |
Target: 5'- cCACCGAUGAGGccaGGCAuucggauGCGCCg-- -3' miRNA: 3'- aGUGGCUGCUCCug-CCGU-------UGUGGguc -5' |
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18692 | 3' | -56.9 | NC_004682.1 | + | 13584 | 0.7 | 0.387606 |
Target: 5'- -uGCCGACGuaccGGACuGGCcuuGCACCUGGa -3' miRNA: 3'- agUGGCUGCu---CCUG-CCGu--UGUGGGUC- -5' |
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18692 | 3' | -56.9 | NC_004682.1 | + | 13436 | 1.09 | 0.000648 |
Target: 5'- gUCACCGACGAGGACGGCAACACCCAGa -3' miRNA: 3'- -AGUGGCUGCUCCUGCCGUUGUGGGUC- -5' |
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18692 | 3' | -56.9 | NC_004682.1 | + | 13270 | 0.67 | 0.53436 |
Target: 5'- aUCACCGucauGCGAGaucuGCGGUA--GCCCAGg -3' miRNA: 3'- -AGUGGC----UGCUCc---UGCCGUugUGGGUC- -5' |
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18692 | 3' | -56.9 | NC_004682.1 | + | 9306 | 0.68 | 0.48275 |
Target: 5'- -aACCG-CGAGGACGGCcaguGgGUCCAGg -3' miRNA: 3'- agUGGCuGCUCCUGCCGu---UgUGGGUC- -5' |
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18692 | 3' | -56.9 | NC_004682.1 | + | 6506 | 0.68 | 0.492889 |
Target: 5'- gCACCGuccaugauCGAGGAccacauCGGgAACGCCCGa -3' miRNA: 3'- aGUGGCu-------GCUCCU------GCCgUUGUGGGUc -5' |
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18692 | 3' | -56.9 | NC_004682.1 | + | 5471 | 0.72 | 0.27541 |
Target: 5'- gCAUCGGCGcggccugguacuGGACGGUcgAGCGCCCGGa -3' miRNA: 3'- aGUGGCUGCu-----------CCUGCCG--UUGUGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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