miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18692 3' -56.9 NC_004682.1 + 13436 1.09 0.000648
Target:  5'- gUCACCGACGAGGACGGCAACACCCAGa -3'
miRNA:   3'- -AGUGGCUGCUCCUGCCGUUGUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 21389 0.66 0.62034
Target:  5'- aCAUCGcaucGGACGGCAugACCgAGg -3'
miRNA:   3'- aGUGGCugcuCCUGCCGUugUGGgUC- -5'
18692 3' -56.9 NC_004682.1 + 34870 0.67 0.544926
Target:  5'- cUCcCCGACGuuGGACaGCGACGaguUCCAGa -3'
miRNA:   3'- -AGuGGCUGCu-CCUGcCGUUGU---GGGUC- -5'
18692 3' -56.9 NC_004682.1 + 4317 0.68 0.523866
Target:  5'- aUCGCUGACGAGuuCGGCAAgcacguugagcCGCUCAc -3'
miRNA:   3'- -AGUGGCUGCUCcuGCCGUU-----------GUGGGUc -5'
18692 3' -56.9 NC_004682.1 + 46137 0.68 0.513453
Target:  5'- gCAgCGcCGAGcGACaGCAGCACCgAGg -3'
miRNA:   3'- aGUgGCuGCUC-CUGcCGUUGUGGgUC- -5'
18692 3' -56.9 NC_004682.1 + 23901 0.68 0.513453
Target:  5'- gCACCGGCcacacccccGAGGACG-CGGCugCCGc -3'
miRNA:   3'- aGUGGCUG---------CUCCUGCcGUUGugGGUc -5'
18692 3' -56.9 NC_004682.1 + 20779 0.68 0.503125
Target:  5'- cUACCGggugguccGCGAGGAgaaCGGCGACugCUAc -3'
miRNA:   3'- aGUGGC--------UGCUCCU---GCCGUUGugGGUc -5'
18692 3' -56.9 NC_004682.1 + 22583 0.68 0.490853
Target:  5'- -aGCCGAUGAGGcuuccugacguuCGGCAACugACUCAGc -3'
miRNA:   3'- agUGGCUGCUCCu-----------GCCGUUG--UGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 3135 0.68 0.48275
Target:  5'- aUCACUGGCGcAGG-CGGCGcaGCAgCCGc -3'
miRNA:   3'- -AGUGGCUGC-UCCuGCCGU--UGUgGGUc -5'
18692 3' -56.9 NC_004682.1 + 9306 0.68 0.48275
Target:  5'- -aACCG-CGAGGACGGCcaguGgGUCCAGg -3'
miRNA:   3'- agUGGCuGCUCCUGCCGu---UgUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 42535 0.68 0.472712
Target:  5'- aC-CCGACGuGGcuCGGCGGCGCCUc- -3'
miRNA:   3'- aGuGGCUGCuCCu-GCCGUUGUGGGuc -5'
18692 3' -56.9 NC_004682.1 + 22447 0.76 0.168647
Target:  5'- cUUGCUGAUGAGGACGGaAACAUCCAc -3'
miRNA:   3'- -AGUGGCUGCUCCUGCCgUUGUGGGUc -5'
18692 3' -56.9 NC_004682.1 + 5471 0.72 0.27541
Target:  5'- gCAUCGGCGcggccugguacuGGACGGUcgAGCGCCCGGa -3'
miRNA:   3'- aGUGGCUGCu-----------CCUGCCG--UUGUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 44 0.72 0.276794
Target:  5'- --uUCGAUGGGGAUGGacACGCCCAGg -3'
miRNA:   3'- aguGGCUGCUCCUGCCguUGUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 25003 0.72 0.290221
Target:  5'- aCGCCGACucGG-CGGCAucugcucGCAUCCAGg -3'
miRNA:   3'- aGUGGCUGcuCCuGCCGU-------UGUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 25261 0.72 0.305649
Target:  5'- cCACCG-CGucaAGGcccACGGCGugGCCCAGu -3'
miRNA:   3'- aGUGGCuGC---UCC---UGCCGUugUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 29101 0.68 0.472712
Target:  5'- --gUCGGCGGGGuCGGCuucgagcuuCGCCCGGa -3'
miRNA:   3'- aguGGCUGCUCCuGCCGuu-------GUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 40231 0.68 0.472712
Target:  5'- -gGCCGACGAacACGGCcuggucAAUGCCCAGu -3'
miRNA:   3'- agUGGCUGCUccUGCCG------UUGUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 34531 0.76 0.15133
Target:  5'- -uGCCGGugaagaaGAGGACGGUGGCACCCAc -3'
miRNA:   3'- agUGGCUg------CUCCUGCCGUUGUGGGUc -5'
18692 3' -56.9 NC_004682.1 + 38438 0.66 0.642107
Target:  5'- cUCGCgGACGGGGACGaGCcggGGCugCa-- -3'
miRNA:   3'- -AGUGgCUGCUCCUGC-CG---UUGugGguc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.