miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18692 3' -56.9 NC_004682.1 + 38438 0.66 0.642107
Target:  5'- cUCGCgGACGGGGACGaGCcggGGCugCa-- -3'
miRNA:   3'- -AGUGgCUGCUCCUGC-CG---UUGugGguc -5'
18692 3' -56.9 NC_004682.1 + 20922 0.72 0.313214
Target:  5'- gCACCaGACGAGGAUGuGCuuCGCCUg- -3'
miRNA:   3'- aGUGG-CUGCUCCUGC-CGuuGUGGGuc -5'
18692 3' -56.9 NC_004682.1 + 37165 0.73 0.269928
Target:  5'- gUCACCGGCaugGAGGuCGGCAACcugauggacauGCgCCAGg -3'
miRNA:   3'- -AGUGGCUG---CUCCuGCCGUUG-----------UG-GGUC- -5'
18692 3' -56.9 NC_004682.1 + 30772 0.68 0.471714
Target:  5'- -gGCCGACGAGGGCcaauugauGGCcucagucGACuaccagGCCCAGg -3'
miRNA:   3'- agUGGCUGCUCCUG--------CCG-------UUG------UGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 25942 0.74 0.225668
Target:  5'- aCGCCGACGAguGGACcaaGGcCAGCACcCCGGa -3'
miRNA:   3'- aGUGGCUGCU--CCUG---CC-GUUGUG-GGUC- -5'
18692 3' -56.9 NC_004682.1 + 159 0.71 0.32092
Target:  5'- gUCGCCcGCGAGGGCGGCucugaGCCUc- -3'
miRNA:   3'- -AGUGGcUGCUCCUGCCGuug--UGGGuc -5'
18692 3' -56.9 NC_004682.1 + 21257 0.66 0.642107
Target:  5'- uUCGCCGugGAGGuaGCGcCGACACaCGa -3'
miRNA:   3'- -AGUGGCugCUCC--UGCcGUUGUGgGUc -5'
18692 3' -56.9 NC_004682.1 + 33553 0.74 0.219873
Target:  5'- cCGCUGGCGGcGGcaACGGCGGCAgCCGGg -3'
miRNA:   3'- aGUGGCUGCU-CC--UGCCGUUGUgGGUC- -5'
18692 3' -56.9 NC_004682.1 + 34531 0.76 0.15133
Target:  5'- -uGCCGGugaagaaGAGGACGGUGGCACCCAc -3'
miRNA:   3'- agUGGCUg------CUCCUGCCGUUGUGGGUc -5'
18692 3' -56.9 NC_004682.1 + 23901 0.68 0.513453
Target:  5'- gCACCGGCcacacccccGAGGACG-CGGCugCCGc -3'
miRNA:   3'- aGUGGCUG---------CUCCUGCcGUUGugGGUc -5'
18692 3' -56.9 NC_004682.1 + 5471 0.72 0.27541
Target:  5'- gCAUCGGCGcggccugguacuGGACGGUcgAGCGCCCGGa -3'
miRNA:   3'- aGUGGCUGCu-----------CCUGCCG--UUGUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 21389 0.66 0.62034
Target:  5'- aCAUCGcaucGGACGGCAugACCgAGg -3'
miRNA:   3'- aGUGGCugcuCCUGCCGUugUGGgUC- -5'
18692 3' -56.9 NC_004682.1 + 25003 0.72 0.290221
Target:  5'- aCGCCGACucGG-CGGCAucugcucGCAUCCAGg -3'
miRNA:   3'- aGUGGCUGcuCCuGCCGU-------UGUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 25261 0.72 0.305649
Target:  5'- cCACCG-CGucaAGGcccACGGCGugGCCCAGu -3'
miRNA:   3'- aGUGGCuGC---UCC---UGCCGUugUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 29101 0.68 0.472712
Target:  5'- --gUCGGCGGGGuCGGCuucgagcuuCGCCCGGa -3'
miRNA:   3'- aguGGCUGCUCCuGCCGuu-------GUGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 42535 0.68 0.472712
Target:  5'- aC-CCGACGuGGcuCGGCGGCGCCUc- -3'
miRNA:   3'- aGuGGCUGCuCCu-GCCGUUGUGGGuc -5'
18692 3' -56.9 NC_004682.1 + 46137 0.68 0.513453
Target:  5'- gCAgCGcCGAGcGACaGCAGCACCgAGg -3'
miRNA:   3'- aGUgGCuGCUC-CUGcCGUUGUGGgUC- -5'
18692 3' -56.9 NC_004682.1 + 3135 0.68 0.48275
Target:  5'- aUCACUGGCGcAGG-CGGCGcaGCAgCCGc -3'
miRNA:   3'- -AGUGGCUGC-UCCuGCCGU--UGUgGGUc -5'
18692 3' -56.9 NC_004682.1 + 22583 0.68 0.490853
Target:  5'- -aGCCGAUGAGGcuuccugacguuCGGCAACugACUCAGc -3'
miRNA:   3'- agUGGCUGCUCCu-----------GCCGUUG--UGGGUC- -5'
18692 3' -56.9 NC_004682.1 + 20779 0.68 0.503125
Target:  5'- cUACCGggugguccGCGAGGAgaaCGGCGACugCUAc -3'
miRNA:   3'- aGUGGC--------UGCUCCU---GCCGUUGugGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.