miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18692 5' -58.1 NC_004682.1 + 36739 0.66 0.548755
Target:  5'- --aCAAGggcagcuACCGGUAcUCgCUGGCCGAGGu -3'
miRNA:   3'- uagGUUC-------UGGCCGU-AG-GGCCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 5248 0.66 0.546626
Target:  5'- -gCCcAGACCGGcCAcgaguccgacgacuUCCgGGCCAccgAGGa -3'
miRNA:   3'- uaGGuUCUGGCC-GU--------------AGGgCCGGU---UCC- -5'
18692 5' -58.1 NC_004682.1 + 5455 0.66 0.52865
Target:  5'- gAUCUGaaguGGGCCGGCAUCggcgCGGCCu-GGu -3'
miRNA:   3'- -UAGGU----UCUGGCCGUAGg---GCCGGuuCC- -5'
18692 5' -58.1 NC_004682.1 + 30731 0.66 0.527599
Target:  5'- -cCCAGGAacuCC-GCGUCCUGGCCGcgcugucGGGc -3'
miRNA:   3'- uaGGUUCU---GGcCGUAGGGCCGGU-------UCC- -5'
18692 5' -58.1 NC_004682.1 + 30807 0.66 0.517134
Target:  5'- -cCCAgcggcgacuggcuGGugCGGCGgugcuUCCUGGCCGacgAGGg -3'
miRNA:   3'- uaGGU-------------UCugGCCGU-----AGGGCCGGU---UCC- -5'
18692 5' -58.1 NC_004682.1 + 11788 0.66 0.497488
Target:  5'- -cCCAcuGGACCGGUgccGUCUCGGCgucguggaccggCGAGGc -3'
miRNA:   3'- uaGGU--UCUGGCCG---UAGGGCCG------------GUUCC- -5'
18692 5' -58.1 NC_004682.1 + 32797 0.67 0.483229
Target:  5'- -gCCGAGGCCGGUcugggucggaagaaGgCCCgcgaagcGGCCAGGGc -3'
miRNA:   3'- uaGGUUCUGGCCG--------------UaGGG-------CCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 37026 0.67 0.477178
Target:  5'- -aCCGAGGCCGGU-UCaCGGUCGAcGGa -3'
miRNA:   3'- uaGGUUCUGGCCGuAGgGCCGGUU-CC- -5'
18692 5' -58.1 NC_004682.1 + 9829 0.67 0.477178
Target:  5'- cUCCgAGGACCGGauggCCuCaGCCGAGGc -3'
miRNA:   3'- uAGG-UUCUGGCCgua-GG-GcCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 33225 0.67 0.467177
Target:  5'- gAUCCcuacuGGGCCGGCA--CCGGCUAcaccgacucGGGg -3'
miRNA:   3'- -UAGGu----UCUGGCCGUagGGCCGGU---------UCC- -5'
18692 5' -58.1 NC_004682.1 + 33868 0.67 0.467177
Target:  5'- --aCGAGGCCcaGGCGgcUCCCG-CCGAGGc -3'
miRNA:   3'- uagGUUCUGG--CCGU--AGGGCcGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 5130 0.67 0.467177
Target:  5'- gAUCCuGGcgcgugcuGCgGGCAUCUCcgaGGCCAAGGc -3'
miRNA:   3'- -UAGGuUC--------UGgCCGUAGGG---CCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 37378 0.67 0.457286
Target:  5'- -gCCAGGGCCggGGCGUaCCGGgUGAGGu -3'
miRNA:   3'- uaGGUUCUGG--CCGUAgGGCCgGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 34417 0.67 0.447508
Target:  5'- cUCgGAGAcacCCGGCAUCuuGGCgAuGGu -3'
miRNA:   3'- uAGgUUCU---GGCCGUAGggCCGgUuCC- -5'
18692 5' -58.1 NC_004682.1 + 31040 0.67 0.447508
Target:  5'- -aCCGAGACCGGCcagCCgaaGGUcgaCAAGGu -3'
miRNA:   3'- uaGGUUCUGGCCGua-GGg--CCG---GUUCC- -5'
18692 5' -58.1 NC_004682.1 + 2011 0.68 0.428308
Target:  5'- -cCCGAGGCCGacggcGCA-CCCGuCCAGGGu -3'
miRNA:   3'- uaGGUUCUGGC-----CGUaGGGCcGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 41805 0.68 0.409603
Target:  5'- gAUCCu-GACCGGCuggagcauggagAagUCGGCCAGGGc -3'
miRNA:   3'- -UAGGuuCUGGCCG------------UagGGCCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 37708 0.68 0.400443
Target:  5'- uUCCAcGACCGGCGgg-CGGUCAAGu -3'
miRNA:   3'- uAGGUuCUGGCCGUaggGCCGGUUCc -5'
18692 5' -58.1 NC_004682.1 + 7565 0.68 0.391415
Target:  5'- cUCCGAGGCCGGCGggcgcaUCgaGGCCGc-- -3'
miRNA:   3'- uAGGUUCUGGCCGU------AGggCCGGUucc -5'
18692 5' -58.1 NC_004682.1 + 9736 0.69 0.38252
Target:  5'- cGUCUGAGAacCCGGC--CUCGGCUGAGGc -3'
miRNA:   3'- -UAGGUUCU--GGCCGuaGGGCCGGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.