Results 21 - 40 of 40 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 5399 | 0.69 | 0.343373 |
Target: 5'- aAUCCAGGugCGucccuuguagauccaGCGcUCCUGGuCCAGGGg -3' miRNA: 3'- -UAGGUUCugGC---------------CGU-AGGGCC-GGUUCC- -5' |
|||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 2573 | 0.69 | 0.348312 |
Target: 5'- -cCCAAGGCCcgcagGGCAUUCaggGGCCAcAGGg -3' miRNA: 3'- uaGGUUCUGG-----CCGUAGGg--CCGGU-UCC- -5' |
|||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 22100 | 0.69 | 0.340108 |
Target: 5'- cUCCAAGAUCGGCuaccgCUgGGaCAAGGa -3' miRNA: 3'- uAGGUUCUGGCCGua---GGgCCgGUUCC- -5' |
|||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 5743 | 0.69 | 0.365139 |
Target: 5'- gGUCCGAc-CCGGuCGUUCaUGGCCGAGGa -3' miRNA: 3'- -UAGGUUcuGGCC-GUAGG-GCCGGUUCC- -5' |
|||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 47392 | 0.69 | 0.340108 |
Target: 5'- ---gGAGACgCGGCAgcggCUGGCCAAGGa -3' miRNA: 3'- uaggUUCUG-GCCGUag--GGCCGGUUCC- -5' |
|||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 18121 | 0.69 | 0.373761 |
Target: 5'- --gCAGGGCgcguCGGaCAUCgCGGCCAAGGc -3' miRNA: 3'- uagGUUCUG----GCC-GUAGgGCCGGUUCC- -5' |
|||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 18248 | 0.69 | 0.379878 |
Target: 5'- -aUCGAGGCCGGUAUcgaCCUGGCUgucggugccgcgcaGAGGg -3' miRNA: 3'- uaGGUUCUGGCCGUA---GGGCCGG--------------UUCC- -5' |
|||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 9736 | 0.69 | 0.38252 |
Target: 5'- cGUCUGAGAacCCGGC--CUCGGCUGAGGc -3' miRNA: 3'- -UAGGUUCU--GGCCGuaGGGCCGGUUCC- -5' |
|||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 33809 | 0.7 | 0.324124 |
Target: 5'- -gCUGAGGCCccgaagaaGGC--CCCGGCCAAGGc -3' miRNA: 3'- uaGGUUCUGG--------CCGuaGGGCCGGUUCC- -5' |
|||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 30463 | 0.7 | 0.316343 |
Target: 5'- uGUCC-AGACCGGUcugCUCGGCCAc-- -3' miRNA: 3'- -UAGGuUCUGGCCGua-GGGCCGGUucc -5' |
|||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 43156 | 0.7 | 0.308705 |
Target: 5'- gGUCCAGG--CGGuCGUCCCGGCCuucuuGGc -3' miRNA: 3'- -UAGGUUCugGCC-GUAGGGCCGGuu---CC- -5' |
|||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 26085 | 0.71 | 0.279564 |
Target: 5'- aGUCCGAcGCCGGCcUCaucgcgaCGGCUGAGGa -3' miRNA: 3'- -UAGGUUcUGGCCGuAGg------GCCGGUUCC- -5' |
|||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 2439 | 0.71 | 0.252653 |
Target: 5'- cUUCGGGACCGGUGUCuCCGGU--GGGa -3' miRNA: 3'- uAGGUUCUGGCCGUAG-GGCCGguUCC- -5' |
|||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 40655 | 0.72 | 0.246267 |
Target: 5'- -gCCAucgccGCCGGCAUCCCGGUCGu-- -3' miRNA: 3'- uaGGUuc---UGGCCGUAGGGCCGGUucc -5' |
|||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 30839 | 0.73 | 0.205249 |
Target: 5'- uGUCgAucACCGGCAUCCCGGCUcAGa -3' miRNA: 3'- -UAGgUucUGGCCGUAGGGCCGGuUCc -5' |
|||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 2292 | 0.74 | 0.174928 |
Target: 5'- cAUCCAAGGCCcccaaGGUccGUCCgGGCCgAAGGg -3' miRNA: 3'- -UAGGUUCUGG-----CCG--UAGGgCCGG-UUCC- -5' |
|||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 32888 | 0.75 | 0.152776 |
Target: 5'- -gCCGGGACgCGGCuacUUCCGcGCCAAGGa -3' miRNA: 3'- uaGGUUCUG-GCCGu--AGGGC-CGGUUCC- -5' |
|||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 48285 | 0.83 | 0.039156 |
Target: 5'- --aCGAGGCCGGCGUCCUGGUCGAGa -3' miRNA: 3'- uagGUUCUGGCCGUAGGGCCGGUUCc -5' |
|||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 455 | 0.83 | 0.039156 |
Target: 5'- cUCCAGGGCCGGUAUCCagCGGCCuccAGGg -3' miRNA: 3'- uAGGUUCUGGCCGUAGG--GCCGGu--UCC- -5' |
|||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 13470 | 1.07 | 0.00061 |
Target: 5'- cAUCCAAGACCGGCAUCCCGGCCAAGGc -3' miRNA: 3'- -UAGGUUCUGGCCGUAGGGCCGGUUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home