miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18692 5' -58.1 NC_004682.1 + 9736 0.69 0.38252
Target:  5'- cGUCUGAGAacCCGGC--CUCGGCUGAGGc -3'
miRNA:   3'- -UAGGUUCU--GGCCGuaGGGCCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 18248 0.69 0.379878
Target:  5'- -aUCGAGGCCGGUAUcgaCCUGGCUgucggugccgcgcaGAGGg -3'
miRNA:   3'- uaGGUUCUGGCCGUA---GGGCCGG--------------UUCC- -5'
18692 5' -58.1 NC_004682.1 + 18121 0.69 0.373761
Target:  5'- --gCAGGGCgcguCGGaCAUCgCGGCCAAGGc -3'
miRNA:   3'- uagGUUCUG----GCC-GUAGgGCCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 5743 0.69 0.365139
Target:  5'- gGUCCGAc-CCGGuCGUUCaUGGCCGAGGa -3'
miRNA:   3'- -UAGGUUcuGGCC-GUAGG-GCCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 2573 0.69 0.348312
Target:  5'- -cCCAAGGCCcgcagGGCAUUCaggGGCCAcAGGg -3'
miRNA:   3'- uaGGUUCUGG-----CCGUAGGg--CCGGU-UCC- -5'
18692 5' -58.1 NC_004682.1 + 5399 0.69 0.343373
Target:  5'- aAUCCAGGugCGucccuuguagauccaGCGcUCCUGGuCCAGGGg -3'
miRNA:   3'- -UAGGUUCugGC---------------CGU-AGGGCC-GGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 22100 0.69 0.340108
Target:  5'- cUCCAAGAUCGGCuaccgCUgGGaCAAGGa -3'
miRNA:   3'- uAGGUUCUGGCCGua---GGgCCgGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 47392 0.69 0.340108
Target:  5'- ---gGAGACgCGGCAgcggCUGGCCAAGGa -3'
miRNA:   3'- uaggUUCUG-GCCGUag--GGCCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 33809 0.7 0.324124
Target:  5'- -gCUGAGGCCccgaagaaGGC--CCCGGCCAAGGc -3'
miRNA:   3'- uaGGUUCUGG--------CCGuaGGGCCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 30463 0.7 0.316343
Target:  5'- uGUCC-AGACCGGUcugCUCGGCCAc-- -3'
miRNA:   3'- -UAGGuUCUGGCCGua-GGGCCGGUucc -5'
18692 5' -58.1 NC_004682.1 + 43156 0.7 0.308705
Target:  5'- gGUCCAGG--CGGuCGUCCCGGCCuucuuGGc -3'
miRNA:   3'- -UAGGUUCugGCC-GUAGGGCCGGuu---CC- -5'
18692 5' -58.1 NC_004682.1 + 26085 0.71 0.279564
Target:  5'- aGUCCGAcGCCGGCcUCaucgcgaCGGCUGAGGa -3'
miRNA:   3'- -UAGGUUcUGGCCGuAGg------GCCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 2439 0.71 0.252653
Target:  5'- cUUCGGGACCGGUGUCuCCGGU--GGGa -3'
miRNA:   3'- uAGGUUCUGGCCGUAG-GGCCGguUCC- -5'
18692 5' -58.1 NC_004682.1 + 40655 0.72 0.246267
Target:  5'- -gCCAucgccGCCGGCAUCCCGGUCGu-- -3'
miRNA:   3'- uaGGUuc---UGGCCGUAGGGCCGGUucc -5'
18692 5' -58.1 NC_004682.1 + 30839 0.73 0.205249
Target:  5'- uGUCgAucACCGGCAUCCCGGCUcAGa -3'
miRNA:   3'- -UAGgUucUGGCCGUAGGGCCGGuUCc -5'
18692 5' -58.1 NC_004682.1 + 2292 0.74 0.174928
Target:  5'- cAUCCAAGGCCcccaaGGUccGUCCgGGCCgAAGGg -3'
miRNA:   3'- -UAGGUUCUGG-----CCG--UAGGgCCGG-UUCC- -5'
18692 5' -58.1 NC_004682.1 + 32888 0.75 0.152776
Target:  5'- -gCCGGGACgCGGCuacUUCCGcGCCAAGGa -3'
miRNA:   3'- uaGGUUCUG-GCCGu--AGGGC-CGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 48285 0.83 0.039156
Target:  5'- --aCGAGGCCGGCGUCCUGGUCGAGa -3'
miRNA:   3'- uagGUUCUGGCCGUAGGGCCGGUUCc -5'
18692 5' -58.1 NC_004682.1 + 455 0.83 0.039156
Target:  5'- cUCCAGGGCCGGUAUCCagCGGCCuccAGGg -3'
miRNA:   3'- uAGGUUCUGGCCGUAGG--GCCGGu--UCC- -5'
18692 5' -58.1 NC_004682.1 + 13470 1.07 0.00061
Target:  5'- cAUCCAAGACCGGCAUCCCGGCCAAGGc -3'
miRNA:   3'- -UAGGUUCUGGCCGUAGGGCCGGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.