miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18692 5' -58.1 NC_004682.1 + 30463 0.7 0.316343
Target:  5'- uGUCC-AGACCGGUcugCUCGGCCAc-- -3'
miRNA:   3'- -UAGGuUCUGGCCGua-GGGCCGGUucc -5'
18692 5' -58.1 NC_004682.1 + 30731 0.66 0.527599
Target:  5'- -cCCAGGAacuCC-GCGUCCUGGCCGcgcugucGGGc -3'
miRNA:   3'- uaGGUUCU---GGcCGUAGGGCCGGU-------UCC- -5'
18692 5' -58.1 NC_004682.1 + 30807 0.66 0.517134
Target:  5'- -cCCAgcggcgacuggcuGGugCGGCGgugcuUCCUGGCCGacgAGGg -3'
miRNA:   3'- uaGGU-------------UCugGCCGU-----AGGGCCGGU---UCC- -5'
18692 5' -58.1 NC_004682.1 + 30839 0.73 0.205249
Target:  5'- uGUCgAucACCGGCAUCCCGGCUcAGa -3'
miRNA:   3'- -UAGgUucUGGCCGUAGGGCCGGuUCc -5'
18692 5' -58.1 NC_004682.1 + 31040 0.67 0.447508
Target:  5'- -aCCGAGACCGGCcagCCgaaGGUcgaCAAGGu -3'
miRNA:   3'- uaGGUUCUGGCCGua-GGg--CCG---GUUCC- -5'
18692 5' -58.1 NC_004682.1 + 32797 0.67 0.483229
Target:  5'- -gCCGAGGCCGGUcugggucggaagaaGgCCCgcgaagcGGCCAGGGc -3'
miRNA:   3'- uaGGUUCUGGCCG--------------UaGGG-------CCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 32888 0.75 0.152776
Target:  5'- -gCCGGGACgCGGCuacUUCCGcGCCAAGGa -3'
miRNA:   3'- uaGGUUCUG-GCCGu--AGGGC-CGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 33225 0.67 0.467177
Target:  5'- gAUCCcuacuGGGCCGGCA--CCGGCUAcaccgacucGGGg -3'
miRNA:   3'- -UAGGu----UCUGGCCGUagGGCCGGU---------UCC- -5'
18692 5' -58.1 NC_004682.1 + 33809 0.7 0.324124
Target:  5'- -gCUGAGGCCccgaagaaGGC--CCCGGCCAAGGc -3'
miRNA:   3'- uaGGUUCUGG--------CCGuaGGGCCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 33868 0.67 0.467177
Target:  5'- --aCGAGGCCcaGGCGgcUCCCG-CCGAGGc -3'
miRNA:   3'- uagGUUCUGG--CCGU--AGGGCcGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 34417 0.67 0.447508
Target:  5'- cUCgGAGAcacCCGGCAUCuuGGCgAuGGu -3'
miRNA:   3'- uAGgUUCU---GGCCGUAGggCCGgUuCC- -5'
18692 5' -58.1 NC_004682.1 + 36739 0.66 0.548755
Target:  5'- --aCAAGggcagcuACCGGUAcUCgCUGGCCGAGGu -3'
miRNA:   3'- uagGUUC-------UGGCCGU-AG-GGCCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 37026 0.67 0.477178
Target:  5'- -aCCGAGGCCGGU-UCaCGGUCGAcGGa -3'
miRNA:   3'- uaGGUUCUGGCCGuAGgGCCGGUU-CC- -5'
18692 5' -58.1 NC_004682.1 + 37378 0.67 0.457286
Target:  5'- -gCCAGGGCCggGGCGUaCCGGgUGAGGu -3'
miRNA:   3'- uaGGUUCUGG--CCGUAgGGCCgGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 37708 0.68 0.400443
Target:  5'- uUCCAcGACCGGCGgg-CGGUCAAGu -3'
miRNA:   3'- uAGGUuCUGGCCGUaggGCCGGUUCc -5'
18692 5' -58.1 NC_004682.1 + 40655 0.72 0.246267
Target:  5'- -gCCAucgccGCCGGCAUCCCGGUCGu-- -3'
miRNA:   3'- uaGGUuc---UGGCCGUAGGGCCGGUucc -5'
18692 5' -58.1 NC_004682.1 + 41805 0.68 0.409603
Target:  5'- gAUCCu-GACCGGCuggagcauggagAagUCGGCCAGGGc -3'
miRNA:   3'- -UAGGuuCUGGCCG------------UagGGCCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 43156 0.7 0.308705
Target:  5'- gGUCCAGG--CGGuCGUCCCGGCCuucuuGGc -3'
miRNA:   3'- -UAGGUUCugGCC-GUAGGGCCGGuu---CC- -5'
18692 5' -58.1 NC_004682.1 + 47392 0.69 0.340108
Target:  5'- ---gGAGACgCGGCAgcggCUGGCCAAGGa -3'
miRNA:   3'- uaggUUCUG-GCCGUag--GGCCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 48285 0.83 0.039156
Target:  5'- --aCGAGGCCGGCGUCCUGGUCGAGa -3'
miRNA:   3'- uagGUUCUGGCCGUAGGGCCGGUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.