miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18692 5' -58.1 NC_004682.1 + 13470 1.07 0.00061
Target:  5'- cAUCCAAGACCGGCAUCCCGGCCAAGGc -3'
miRNA:   3'- -UAGGUUCUGGCCGUAGGGCCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 7565 0.68 0.391415
Target:  5'- cUCCGAGGCCGGCGggcgcaUCgaGGCCGc-- -3'
miRNA:   3'- uAGGUUCUGGCCGU------AGggCCGGUucc -5'
18692 5' -58.1 NC_004682.1 + 2011 0.68 0.428308
Target:  5'- -cCCGAGGCCGacggcGCA-CCCGuCCAGGGu -3'
miRNA:   3'- uaGGUUCUGGC-----CGUaGGGCcGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 34417 0.67 0.447508
Target:  5'- cUCgGAGAcacCCGGCAUCuuGGCgAuGGu -3'
miRNA:   3'- uAGgUUCU---GGCCGUAGggCCGgUuCC- -5'
18692 5' -58.1 NC_004682.1 + 37378 0.67 0.457286
Target:  5'- -gCCAGGGCCggGGCGUaCCGGgUGAGGu -3'
miRNA:   3'- uaGGUUCUGG--CCGUAgGGCCgGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 5130 0.67 0.467177
Target:  5'- gAUCCuGGcgcgugcuGCgGGCAUCUCcgaGGCCAAGGc -3'
miRNA:   3'- -UAGGuUC--------UGgCCGUAGGG---CCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 11788 0.66 0.497488
Target:  5'- -cCCAcuGGACCGGUgccGUCUCGGCgucguggaccggCGAGGc -3'
miRNA:   3'- uaGGU--UCUGGCCG---UAGGGCCG------------GUUCC- -5'
18692 5' -58.1 NC_004682.1 + 5455 0.66 0.52865
Target:  5'- gAUCUGaaguGGGCCGGCAUCggcgCGGCCu-GGu -3'
miRNA:   3'- -UAGGU----UCUGGCCGUAGg---GCCGGuuCC- -5'
18692 5' -58.1 NC_004682.1 + 5248 0.66 0.546626
Target:  5'- -gCCcAGACCGGcCAcgaguccgacgacuUCCgGGCCAccgAGGa -3'
miRNA:   3'- uaGGuUCUGGCC-GU--------------AGGgCCGGU---UCC- -5'
18692 5' -58.1 NC_004682.1 + 9736 0.69 0.38252
Target:  5'- cGUCUGAGAacCCGGC--CUCGGCUGAGGc -3'
miRNA:   3'- -UAGGUUCU--GGCCGuaGGGCCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 18248 0.69 0.379878
Target:  5'- -aUCGAGGCCGGUAUcgaCCUGGCUgucggugccgcgcaGAGGg -3'
miRNA:   3'- uaGGUUCUGGCCGUA---GGGCCGG--------------UUCC- -5'
18692 5' -58.1 NC_004682.1 + 455 0.83 0.039156
Target:  5'- cUCCAGGGCCGGUAUCCagCGGCCuccAGGg -3'
miRNA:   3'- uAGGUUCUGGCCGUAGG--GCCGGu--UCC- -5'
18692 5' -58.1 NC_004682.1 + 2292 0.74 0.174928
Target:  5'- cAUCCAAGGCCcccaaGGUccGUCCgGGCCgAAGGg -3'
miRNA:   3'- -UAGGUUCUGG-----CCG--UAGGgCCGG-UUCC- -5'
18692 5' -58.1 NC_004682.1 + 43156 0.7 0.308705
Target:  5'- gGUCCAGG--CGGuCGUCCCGGCCuucuuGGc -3'
miRNA:   3'- -UAGGUUCugGCC-GUAGGGCCGGuu---CC- -5'
18692 5' -58.1 NC_004682.1 + 30463 0.7 0.316343
Target:  5'- uGUCC-AGACCGGUcugCUCGGCCAc-- -3'
miRNA:   3'- -UAGGuUCUGGCCGua-GGGCCGGUucc -5'
18692 5' -58.1 NC_004682.1 + 22100 0.69 0.340108
Target:  5'- cUCCAAGAUCGGCuaccgCUgGGaCAAGGa -3'
miRNA:   3'- uAGGUUCUGGCCGua---GGgCCgGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 2573 0.69 0.348312
Target:  5'- -cCCAAGGCCcgcagGGCAUUCaggGGCCAcAGGg -3'
miRNA:   3'- uaGGUUCUGG-----CCGUAGGg--CCGGU-UCC- -5'
18692 5' -58.1 NC_004682.1 + 5743 0.69 0.365139
Target:  5'- gGUCCGAc-CCGGuCGUUCaUGGCCGAGGa -3'
miRNA:   3'- -UAGGUUcuGGCC-GUAGG-GCCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 18121 0.69 0.373761
Target:  5'- --gCAGGGCgcguCGGaCAUCgCGGCCAAGGc -3'
miRNA:   3'- uagGUUCUG----GCC-GUAGgGCCGGUUCC- -5'
18692 5' -58.1 NC_004682.1 + 48285 0.83 0.039156
Target:  5'- --aCGAGGCCGGCGUCCUGGUCGAGa -3'
miRNA:   3'- uagGUUCUGGCCGUAGGGCCGGUUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.