Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18692 | 5' | -58.1 | NC_004682.1 | + | 30807 | 0.66 | 0.517134 |
Target: 5'- -cCCAgcggcgacuggcuGGugCGGCGgugcuUCCUGGCCGacgAGGg -3' miRNA: 3'- uaGGU-------------UCugGCCGU-----AGGGCCGGU---UCC- -5' |
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18692 | 5' | -58.1 | NC_004682.1 | + | 40655 | 0.72 | 0.246267 |
Target: 5'- -gCCAucgccGCCGGCAUCCCGGUCGu-- -3' miRNA: 3'- uaGGUuc---UGGCCGUAGGGCCGGUucc -5' |
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18692 | 5' | -58.1 | NC_004682.1 | + | 32888 | 0.75 | 0.152776 |
Target: 5'- -gCCGGGACgCGGCuacUUCCGcGCCAAGGa -3' miRNA: 3'- uaGGUUCUG-GCCGu--AGGGC-CGGUUCC- -5' |
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18692 | 5' | -58.1 | NC_004682.1 | + | 48285 | 0.83 | 0.039156 |
Target: 5'- --aCGAGGCCGGCGUCCUGGUCGAGa -3' miRNA: 3'- uagGUUCUGGCCGUAGGGCCGGUUCc -5' |
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18692 | 5' | -58.1 | NC_004682.1 | + | 33868 | 0.67 | 0.467177 |
Target: 5'- --aCGAGGCCcaGGCGgcUCCCG-CCGAGGc -3' miRNA: 3'- uagGUUCUGG--CCGU--AGGGCcGGUUCC- -5' |
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18692 | 5' | -58.1 | NC_004682.1 | + | 33225 | 0.67 | 0.467177 |
Target: 5'- gAUCCcuacuGGGCCGGCA--CCGGCUAcaccgacucGGGg -3' miRNA: 3'- -UAGGu----UCUGGCCGUagGGCCGGU---------UCC- -5' |
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18692 | 5' | -58.1 | NC_004682.1 | + | 41805 | 0.68 | 0.409603 |
Target: 5'- gAUCCu-GACCGGCuggagcauggagAagUCGGCCAGGGc -3' miRNA: 3'- -UAGGuuCUGGCCG------------UagGGCCGGUUCC- -5' |
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18692 | 5' | -58.1 | NC_004682.1 | + | 37708 | 0.68 | 0.400443 |
Target: 5'- uUCCAcGACCGGCGgg-CGGUCAAGu -3' miRNA: 3'- uAGGUuCUGGCCGUaggGCCGGUUCc -5' |
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18692 | 5' | -58.1 | NC_004682.1 | + | 36739 | 0.66 | 0.548755 |
Target: 5'- --aCAAGggcagcuACCGGUAcUCgCUGGCCGAGGu -3' miRNA: 3'- uagGUUC-------UGGCCGU-AG-GGCCGGUUCC- -5' |
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18692 | 5' | -58.1 | NC_004682.1 | + | 2439 | 0.71 | 0.252653 |
Target: 5'- cUUCGGGACCGGUGUCuCCGGU--GGGa -3' miRNA: 3'- uAGGUUCUGGCCGUAG-GGCCGguUCC- -5' |
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18692 | 5' | -58.1 | NC_004682.1 | + | 47392 | 0.69 | 0.340108 |
Target: 5'- ---gGAGACgCGGCAgcggCUGGCCAAGGa -3' miRNA: 3'- uaggUUCUG-GCCGUag--GGCCGGUUCC- -5' |
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18692 | 5' | -58.1 | NC_004682.1 | + | 5399 | 0.69 | 0.343373 |
Target: 5'- aAUCCAGGugCGucccuuguagauccaGCGcUCCUGGuCCAGGGg -3' miRNA: 3'- -UAGGUUCugGC---------------CGU-AGGGCC-GGUUCC- -5' |
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18692 | 5' | -58.1 | NC_004682.1 | + | 32797 | 0.67 | 0.483229 |
Target: 5'- -gCCGAGGCCGGUcugggucggaagaaGgCCCgcgaagcGGCCAGGGc -3' miRNA: 3'- uaGGUUCUGGCCG--------------UaGGG-------CCGGUUCC- -5' |
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18692 | 5' | -58.1 | NC_004682.1 | + | 33809 | 0.7 | 0.324124 |
Target: 5'- -gCUGAGGCCccgaagaaGGC--CCCGGCCAAGGc -3' miRNA: 3'- uaGGUUCUGG--------CCGuaGGGCCGGUUCC- -5' |
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18692 | 5' | -58.1 | NC_004682.1 | + | 37026 | 0.67 | 0.477178 |
Target: 5'- -aCCGAGGCCGGU-UCaCGGUCGAcGGa -3' miRNA: 3'- uaGGUUCUGGCCGuAGgGCCGGUU-CC- -5' |
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18692 | 5' | -58.1 | NC_004682.1 | + | 25928 | 0.69 | 0.38252 |
Target: 5'- -aCCAAGGCCaGCAcCCCGGaCGAGcGg -3' miRNA: 3'- uaGGUUCUGGcCGUaGGGCCgGUUC-C- -5' |
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18692 | 5' | -58.1 | NC_004682.1 | + | 26085 | 0.71 | 0.279564 |
Target: 5'- aGUCCGAcGCCGGCcUCaucgcgaCGGCUGAGGa -3' miRNA: 3'- -UAGGUUcUGGCCGuAGg------GCCGGUUCC- -5' |
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18692 | 5' | -58.1 | NC_004682.1 | + | 30839 | 0.73 | 0.205249 |
Target: 5'- uGUCgAucACCGGCAUCCCGGCUcAGa -3' miRNA: 3'- -UAGgUucUGGCCGUAGGGCCGGuUCc -5' |
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18692 | 5' | -58.1 | NC_004682.1 | + | 9829 | 0.67 | 0.477178 |
Target: 5'- cUCCgAGGACCGGauggCCuCaGCCGAGGc -3' miRNA: 3'- uAGG-UUCUGGCCgua-GG-GcCGGUUCC- -5' |
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18692 | 5' | -58.1 | NC_004682.1 | + | 31040 | 0.67 | 0.447508 |
Target: 5'- -aCCGAGACCGGCcagCCgaaGGUcgaCAAGGu -3' miRNA: 3'- uaGGUUCUGGCCGua-GGg--CCG---GUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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