miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18693 3' -59.1 NC_004682.1 + 41527 0.68 0.383095
Target:  5'- uGGCGCggucgacgAgCGCCUGCGuggUCGGcCUGCACc -3'
miRNA:   3'- gCCGCG--------UgGCGGGCGU---AGCU-GAUGUG- -5'
18693 3' -59.1 NC_004682.1 + 44147 0.68 0.38135
Target:  5'- aGGCuuggaguuccacCACCGCCUGCggCGGCUuCACa -3'
miRNA:   3'- gCCGc-----------GUGGCGGGCGuaGCUGAuGUG- -5'
18693 3' -59.1 NC_004682.1 + 44040 0.68 0.360829
Target:  5'- gCGGUGCcCCuacagcuacaagcugGCCCGCGUCGACa---- -3'
miRNA:   3'- -GCCGCGuGG---------------CGGGCGUAGCUGaugug -5'
18693 3' -59.1 NC_004682.1 + 6442 0.68 0.357484
Target:  5'- aGGUguacuugucgaGCACCGCCCGCGcCGugUcgGCg -3'
miRNA:   3'- gCCG-----------CGUGGCGGGCGUaGCugAugUG- -5'
18693 3' -59.1 NC_004682.1 + 14224 0.68 0.357484
Target:  5'- aGGCaGCGCCGCCCGgAggaUCGGgaGgACg -3'
miRNA:   3'- gCCG-CGUGGCGGGCgU---AGCUgaUgUG- -5'
18693 3' -59.1 NC_004682.1 + 23187 0.69 0.317531
Target:  5'- uGGUGaCugCGCCaCGCggCGACcGCACc -3'
miRNA:   3'- gCCGC-GugGCGG-GCGuaGCUGaUGUG- -5'
18693 3' -59.1 NC_004682.1 + 12336 0.7 0.288057
Target:  5'- aCGGauCGCGCCGaCCUGCucgguguagGUCGACUcCACg -3'
miRNA:   3'- -GCC--GCGUGGC-GGGCG---------UAGCUGAuGUG- -5'
18693 3' -59.1 NC_004682.1 + 41328 0.71 0.260777
Target:  5'- cCGGuCGgAcCCGUCCGgGcUCGACUACGCg -3'
miRNA:   3'- -GCC-GCgU-GGCGGGCgU-AGCUGAUGUG- -5'
18693 3' -59.1 NC_004682.1 + 9993 0.71 0.254294
Target:  5'- gCGGCGUA-CGUCgGCGUCGACggauCGCg -3'
miRNA:   3'- -GCCGCGUgGCGGgCGUAGCUGau--GUG- -5'
18693 3' -59.1 NC_004682.1 + 39626 0.72 0.201775
Target:  5'- uCGaGCGCACaagcgcaaGCCgUGCGUCGACUGCGu -3'
miRNA:   3'- -GC-CGCGUGg-------CGG-GCGUAGCUGAUGUg -5'
18693 3' -59.1 NC_004682.1 + 10599 0.68 0.400833
Target:  5'- -cGCGCACUGCUCGUAgcgCGAcCUGgGCc -3'
miRNA:   3'- gcCGCGUGGCGGGCGUa--GCU-GAUgUG- -5'
18693 3' -59.1 NC_004682.1 + 9287 0.67 0.427462
Target:  5'- uGGCGCggAUgGCUCGCAucaccugUCGGgUGCGCg -3'
miRNA:   3'- gCCGCG--UGgCGGGCGU-------AGCUgAUGUG- -5'
18693 3' -59.1 NC_004682.1 + 46400 0.67 0.428399
Target:  5'- gGGcCGCACgCGCUucgacaGCAaCGGCUACGCc -3'
miRNA:   3'- gCC-GCGUG-GCGGg-----CGUaGCUGAUGUG- -5'
18693 3' -59.1 NC_004682.1 + 15063 0.67 0.428399
Target:  5'- cCGGCGCACCgacGCCUuguggGCGUgGAagccgACACg -3'
miRNA:   3'- -GCCGCGUGG---CGGG-----CGUAgCUga---UGUG- -5'
18693 3' -59.1 NC_004682.1 + 25995 0.67 0.457053
Target:  5'- aGGCGCaACCGCgCCGUgcGUCuGGCUGgGu -3'
miRNA:   3'- gCCGCG-UGGCG-GGCG--UAG-CUGAUgUg -5'
18693 3' -59.1 NC_004682.1 + 3213 0.66 0.465848
Target:  5'- gCGGCugcuGCGCCGCCUGCGccagugaUCGACc---- -3'
miRNA:   3'- -GCCG----CGUGGCGGGCGU-------AGCUGaugug -5'
18693 3' -59.1 NC_004682.1 + 6017 0.66 0.466831
Target:  5'- uGGCcagccaGCGCCGCCCuugcCGUCGAgCUGCu- -3'
miRNA:   3'- gCCG------CGUGGCGGGc---GUAGCU-GAUGug -5'
18693 3' -59.1 NC_004682.1 + 44799 0.66 0.476716
Target:  5'- uGGC-CACCGgCgGCGUCGGCaUGCcCg -3'
miRNA:   3'- gCCGcGUGGCgGgCGUAGCUG-AUGuG- -5'
18693 3' -59.1 NC_004682.1 + 28790 0.66 0.480699
Target:  5'- aCGGCGUcaucuucgucccgccGCCGCCgCgagugggcgGCAUCGGC-ACGCc -3'
miRNA:   3'- -GCCGCG---------------UGGCGG-G---------CGUAGCUGaUGUG- -5'
18693 3' -59.1 NC_004682.1 + 3566 0.66 0.506969
Target:  5'- aGGCGggggguuCACCGUCCGCucccggcccagcaGGCUGCAUg -3'
miRNA:   3'- gCCGC-------GUGGCGGGCGuag----------CUGAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.