Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18693 | 5' | -56.8 | NC_004682.1 | + | 23726 | 0.66 | 0.546436 |
Target: 5'- aGGAgGGCCgcAGGCccGUCGGUCAGGGu -3' miRNA: 3'- -UCUaCCGG--UCCGacUAGCCGGUCUUc -5' |
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18693 | 5' | -56.8 | NC_004682.1 | + | 873 | 0.66 | 0.59016 |
Target: 5'- ---cGGCCAGGgUGGcguUCGGUCGGucGc -3' miRNA: 3'- ucuaCCGGUCCgACU---AGCCGGUCuuC- -5' |
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18693 | 5' | -56.8 | NC_004682.1 | + | 44331 | 0.66 | 0.59016 |
Target: 5'- ---gGGUUGGGCUGAUa-GCCAGAGa -3' miRNA: 3'- ucuaCCGGUCCGACUAgcCGGUCUUc -5' |
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18693 | 5' | -56.8 | NC_004682.1 | + | 40831 | 0.66 | 0.578056 |
Target: 5'- gGGGUGcccgccaGUCGGGCUGGcCGGuCCAGAu- -3' miRNA: 3'- -UCUAC-------CGGUCCGACUaGCC-GGUCUuc -5' |
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18693 | 5' | -56.8 | NC_004682.1 | + | 30177 | 0.67 | 0.490247 |
Target: 5'- cAGAUGGguCCGGuGUUGAUCGGUaccgaccccgagguCGGAGGa -3' miRNA: 3'- -UCUACC--GGUC-CGACUAGCCG--------------GUCUUC- -5' |
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18693 | 5' | -56.8 | NC_004682.1 | + | 43471 | 0.67 | 0.524953 |
Target: 5'- -cAUGGCCGGGaaGAaaGGCguGAAGg -3' miRNA: 3'- ucUACCGGUCCgaCUagCCGguCUUC- -5' |
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18693 | 5' | -56.8 | NC_004682.1 | + | 42552 | 0.67 | 0.535657 |
Target: 5'- gAGGUGGCCgcagggAGGCcGAcccCGGCCAGc-- -3' miRNA: 3'- -UCUACCGG------UCCGaCUa--GCCGGUCuuc -5' |
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18693 | 5' | -56.8 | NC_004682.1 | + | 32044 | 0.68 | 0.469739 |
Target: 5'- cAGAUGGCCGucgccuucauGGCgagcugggacucgcUGGUCGaGUCGGGAGa -3' miRNA: 3'- -UCUACCGGU----------CCG--------------ACUAGC-CGGUCUUC- -5' |
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18693 | 5' | -56.8 | NC_004682.1 | + | 19756 | 0.68 | 0.462665 |
Target: 5'- ----aGCCAgaucGGCUGGUCGGUCGGAu- -3' miRNA: 3'- ucuacCGGU----CCGACUAGCCGGUCUuc -5' |
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18693 | 5' | -56.8 | NC_004682.1 | + | 38020 | 0.69 | 0.377171 |
Target: 5'- aAGA-GGCCcagcGGCUGAUucaCGGCCcGAGGa -3' miRNA: 3'- -UCUaCCGGu---CCGACUA---GCCGGuCUUC- -5' |
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18693 | 5' | -56.8 | NC_004682.1 | + | 5949 | 0.69 | 0.377171 |
Target: 5'- ---gGGCgAGcGCUGGcuggccaaguUCGGCCAGGAGu -3' miRNA: 3'- ucuaCCGgUC-CGACU----------AGCCGGUCUUC- -5' |
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18693 | 5' | -56.8 | NC_004682.1 | + | 35041 | 0.69 | 0.423365 |
Target: 5'- uGGGUGGCCguggaggaAGGCUGggCuGGCCcGAAc -3' miRNA: 3'- -UCUACCGG--------UCCGACuaG-CCGGuCUUc -5' |
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18693 | 5' | -56.8 | NC_004682.1 | + | 23427 | 0.73 | 0.222236 |
Target: 5'- uAGGUGGCgGGGcCUGGaacuaCGGCCAGGAc -3' miRNA: 3'- -UCUACCGgUCC-GACUa----GCCGGUCUUc -5' |
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18693 | 5' | -56.8 | NC_004682.1 | + | 12144 | 0.74 | 0.205142 |
Target: 5'- -cGUGGUCAGGUUGGugUCGGCCAGc-- -3' miRNA: 3'- ucUACCGGUCCGACU--AGCCGGUCuuc -5' |
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18693 | 5' | -56.8 | NC_004682.1 | + | 13743 | 1.09 | 0.000503 |
Target: 5'- gAGAUGGCCAGGCUGAUCGGCCAGAAGg -3' miRNA: 3'- -UCUACCGGUCCGACUAGCCGGUCUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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