miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18694 3' -54.5 NC_004682.1 + 17611 0.66 0.767613
Target:  5'- cGGACAcgcUgGGCUcGCUGCugGUgCCCa -3'
miRNA:   3'- uCCUGU---AgCUGA-UGGCGugCAaGGGc -5'
18694 3' -54.5 NC_004682.1 + 3073 0.66 0.767613
Target:  5'- cGGGAUGUCGAC-GCCGCgucggagggugACGgagUUCCa -3'
miRNA:   3'- -UCCUGUAGCUGaUGGCG-----------UGCa--AGGGc -5'
18694 3' -54.5 NC_004682.1 + 34697 0.66 0.767613
Target:  5'- cGGcGCAUCGGCguggGCCaccucggcgugGCGuCGUUCCUGg -3'
miRNA:   3'- uCC-UGUAGCUGa---UGG-----------CGU-GCAAGGGC- -5'
18694 3' -54.5 NC_004682.1 + 13556 0.66 0.757375
Target:  5'- gAGGGCuUCGAguccgagaagguCUACCGgAUgcgGUUCCCGc -3'
miRNA:   3'- -UCCUGuAGCU------------GAUGGCgUG---CAAGGGC- -5'
18694 3' -54.5 NC_004682.1 + 33440 0.66 0.736524
Target:  5'- uGGGGCGcguUCGACUGCCuCugGgugccaccacCCCGg -3'
miRNA:   3'- -UCCUGU---AGCUGAUGGcGugCaa--------GGGC- -5'
18694 3' -54.5 NC_004682.1 + 5112 0.66 0.725935
Target:  5'- -cGugGUCGAC-GCCGCGcCGaUCCUGg -3'
miRNA:   3'- ucCugUAGCUGaUGGCGU-GCaAGGGC- -5'
18694 3' -54.5 NC_004682.1 + 30498 0.67 0.715252
Target:  5'- cAGGugGUCGACggcuucgACCGgGCcuacCCCGg -3'
miRNA:   3'- -UCCugUAGCUGa------UGGCgUGcaa-GGGC- -5'
18694 3' -54.5 NC_004682.1 + 129 0.67 0.715252
Target:  5'- uGGGC-UCGACcGCCGgCACGggCCgGc -3'
miRNA:   3'- uCCUGuAGCUGaUGGC-GUGCaaGGgC- -5'
18694 3' -54.5 NC_004682.1 + 13180 0.67 0.69365
Target:  5'- uGGGAgAUCcugGGCUACCGCagaucucgcaugACGgugaucgUCCCGa -3'
miRNA:   3'- -UCCUgUAG---CUGAUGGCG------------UGCa------AGGGC- -5'
18694 3' -54.5 NC_004682.1 + 46639 0.67 0.682754
Target:  5'- cGGuACAccuaCGACUACCGCACGggugaguaCCGc -3'
miRNA:   3'- uCC-UGUa---GCUGAUGGCGUGCaag-----GGC- -5'
18694 3' -54.5 NC_004682.1 + 30778 0.67 0.682754
Target:  5'- cGGugAUCGACaugcgaGCCGUGCGagCCUGc -3'
miRNA:   3'- uCCugUAGCUGa-----UGGCGUGCaaGGGC- -5'
18694 3' -54.5 NC_004682.1 + 43379 0.67 0.671809
Target:  5'- gGGGuACGUCGGCUugCccuuCACGccuuucUUCCCGg -3'
miRNA:   3'- -UCC-UGUAGCUGAugGc---GUGC------AAGGGC- -5'
18694 3' -54.5 NC_004682.1 + 31607 0.68 0.649818
Target:  5'- cAGGuCAUCGAgcGCaCGCugGgcaUCCCGa -3'
miRNA:   3'- -UCCuGUAGCUgaUG-GCGugCa--AGGGC- -5'
18694 3' -54.5 NC_004682.1 + 24635 0.68 0.627761
Target:  5'- gGGGACGUUG-UUGCCGC-CGUUCgaCGu -3'
miRNA:   3'- -UCCUGUAGCuGAUGGCGuGCAAGg-GC- -5'
18694 3' -54.5 NC_004682.1 + 23918 0.68 0.627761
Target:  5'- gAGGACG-CGGCUGCCGCgAUGggCaCGa -3'
miRNA:   3'- -UCCUGUaGCUGAUGGCG-UGCaaGgGC- -5'
18694 3' -54.5 NC_004682.1 + 18286 0.68 0.627761
Target:  5'- gAGGGuCGUCGGagcaguCCGCAaccUGUUCCCGu -3'
miRNA:   3'- -UCCU-GUAGCUgau---GGCGU---GCAAGGGC- -5'
18694 3' -54.5 NC_004682.1 + 22095 0.68 0.614529
Target:  5'- cGGGucuccaAgAUCGGCUACCGCugGgacaaggacggCCCGa -3'
miRNA:   3'- -UCC------UgUAGCUGAUGGCGugCaa---------GGGC- -5'
18694 3' -54.5 NC_004682.1 + 37954 0.69 0.551167
Target:  5'- cGGACAUC----GCgGCGCGUUCUCGg -3'
miRNA:   3'- uCCUGUAGcugaUGgCGUGCAAGGGC- -5'
18694 3' -54.5 NC_004682.1 + 11900 0.7 0.52974
Target:  5'- uGGugAUCGGCUugCGCuCGgccUCgCCGg -3'
miRNA:   3'- uCCugUAGCUGAugGCGuGCa--AG-GGC- -5'
18694 3' -54.5 NC_004682.1 + 22150 0.7 0.518085
Target:  5'- uGGAgAUCGGCUaccgagaGCCGCAgGacCCCGu -3'
miRNA:   3'- uCCUgUAGCUGA-------UGGCGUgCaaGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.