miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18695 3' -58.4 NC_004682.1 + 25950 0.66 0.57231
Target:  5'- cCGGGUCCugcGGucgaucagaGACuUCAUCC-GCUCGa -3'
miRNA:   3'- -GCCCAGGu--CC---------CUG-AGUAGGuCGAGCc -5'
18695 3' -58.4 NC_004682.1 + 9196 0.66 0.540752
Target:  5'- uGGGUCCAcgccGGGGucgaugUUCggGUCUGGCUUGGa -3'
miRNA:   3'- gCCCAGGU----CCCU------GAG--UAGGUCGAGCC- -5'
18695 3' -58.4 NC_004682.1 + 29618 0.67 0.509799
Target:  5'- gGGGcUCCAGGGGauCUCGUCCAucagacgcccuGCUUc- -3'
miRNA:   3'- gCCC-AGGUCCCU--GAGUAGGU-----------CGAGcc -5'
18695 3' -58.4 NC_004682.1 + 17007 0.67 0.499644
Target:  5'- gGGGUCuucgagCAGGGcCUCAagccCCAGUUCGa -3'
miRNA:   3'- gCCCAG------GUCCCuGAGUa---GGUCGAGCc -5'
18695 3' -58.4 NC_004682.1 + 25664 0.67 0.479612
Target:  5'- gGGGUCCGGGuAC-CAaCCGGCagcaggcgUCGGg -3'
miRNA:   3'- gCCCAGGUCCcUGaGUaGGUCG--------AGCC- -5'
18695 3' -58.4 NC_004682.1 + 33747 0.67 0.469744
Target:  5'- uCGGGgccucagCCGGGGGCUCGUUgaagAGCgacucuUCGGg -3'
miRNA:   3'- -GCCCa------GGUCCCUGAGUAGg---UCG------AGCC- -5'
18695 3' -58.4 NC_004682.1 + 43286 0.68 0.444588
Target:  5'- uGGGUCCGGGucaaagcGCUCGgcggcgauguucucuUCCAGUUCGcGg -3'
miRNA:   3'- gCCCAGGUCCc------UGAGU---------------AGGUCGAGC-C- -5'
18695 3' -58.4 NC_004682.1 + 25792 0.68 0.412867
Target:  5'- gGGGUCCGGcuuGcCUCGUaCUAGCUCGa -3'
miRNA:   3'- gCCCAGGUCc--CuGAGUA-GGUCGAGCc -5'
18695 3' -58.4 NC_004682.1 + 6339 0.69 0.394872
Target:  5'- uGGGUCC-GGGACUCcccgCCgacacGGCgCGGg -3'
miRNA:   3'- gCCCAGGuCCCUGAGua--GG-----UCGaGCC- -5'
18695 3' -58.4 NC_004682.1 + 32926 0.69 0.377392
Target:  5'- -aGGUgCcGGGACgc-UCCAGCUCGGu -3'
miRNA:   3'- gcCCAgGuCCCUGaguAGGUCGAGCC- -5'
18695 3' -58.4 NC_004682.1 + 14474 1.11 0.000383
Target:  5'- gCGGGUCCAGGGACUCAUCCAGCUCGGg -3'
miRNA:   3'- -GCCCAGGUCCCUGAGUAGGUCGAGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.