Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18695 | 3' | -58.4 | NC_004682.1 | + | 14474 | 1.11 | 0.000383 |
Target: 5'- gCGGGUCCAGGGACUCAUCCAGCUCGGg -3' miRNA: 3'- -GCCCAGGUCCCUGAGUAGGUCGAGCC- -5' |
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18695 | 3' | -58.4 | NC_004682.1 | + | 32926 | 0.69 | 0.377392 |
Target: 5'- -aGGUgCcGGGACgc-UCCAGCUCGGu -3' miRNA: 3'- gcCCAgGuCCCUGaguAGGUCGAGCC- -5' |
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18695 | 3' | -58.4 | NC_004682.1 | + | 6339 | 0.69 | 0.394872 |
Target: 5'- uGGGUCC-GGGACUCcccgCCgacacGGCgCGGg -3' miRNA: 3'- gCCCAGGuCCCUGAGua--GG-----UCGaGCC- -5' |
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18695 | 3' | -58.4 | NC_004682.1 | + | 25792 | 0.68 | 0.412867 |
Target: 5'- gGGGUCCGGcuuGcCUCGUaCUAGCUCGa -3' miRNA: 3'- gCCCAGGUCc--CuGAGUA-GGUCGAGCc -5' |
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18695 | 3' | -58.4 | NC_004682.1 | + | 43286 | 0.68 | 0.444588 |
Target: 5'- uGGGUCCGGGucaaagcGCUCGgcggcgauguucucuUCCAGUUCGcGg -3' miRNA: 3'- gCCCAGGUCCc------UGAGU---------------AGGUCGAGC-C- -5' |
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18695 | 3' | -58.4 | NC_004682.1 | + | 33747 | 0.67 | 0.469744 |
Target: 5'- uCGGGgccucagCCGGGGGCUCGUUgaagAGCgacucuUCGGg -3' miRNA: 3'- -GCCCa------GGUCCCUGAGUAGg---UCG------AGCC- -5' |
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18695 | 3' | -58.4 | NC_004682.1 | + | 25664 | 0.67 | 0.479612 |
Target: 5'- gGGGUCCGGGuAC-CAaCCGGCagcaggcgUCGGg -3' miRNA: 3'- gCCCAGGUCCcUGaGUaGGUCG--------AGCC- -5' |
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18695 | 3' | -58.4 | NC_004682.1 | + | 17007 | 0.67 | 0.499644 |
Target: 5'- gGGGUCuucgagCAGGGcCUCAagccCCAGUUCGa -3' miRNA: 3'- gCCCAG------GUCCCuGAGUa---GGUCGAGCc -5' |
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18695 | 3' | -58.4 | NC_004682.1 | + | 29618 | 0.67 | 0.509799 |
Target: 5'- gGGGcUCCAGGGGauCUCGUCCAucagacgcccuGCUUc- -3' miRNA: 3'- gCCC-AGGUCCCU--GAGUAGGU-----------CGAGcc -5' |
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18695 | 3' | -58.4 | NC_004682.1 | + | 9196 | 0.66 | 0.540752 |
Target: 5'- uGGGUCCAcgccGGGGucgaugUUCggGUCUGGCUUGGa -3' miRNA: 3'- gCCCAGGU----CCCU------GAG--UAGGUCGAGCC- -5' |
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18695 | 3' | -58.4 | NC_004682.1 | + | 25950 | 0.66 | 0.57231 |
Target: 5'- cCGGGUCCugcGGucgaucagaGACuUCAUCC-GCUCGa -3' miRNA: 3'- -GCCCAGGu--CC---------CUG-AGUAGGuCGAGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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