miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18696 3' -49.3 NC_004682.1 + 41180 0.66 0.957435
Target:  5'- aCCAGCagaUCCUCGGCGAcCUGAucGCGa -3'
miRNA:   3'- gGGUUG---AGGGGUUGCUuGAUUu-CGUg -5'
18696 3' -49.3 NC_004682.1 + 10358 0.66 0.957435
Target:  5'- cCUCAGCcauUCCgCAACGGA---GAGCGCg -3'
miRNA:   3'- -GGGUUG---AGGgGUUGCUUgauUUCGUG- -5'
18696 3' -49.3 NC_004682.1 + 7075 0.66 0.957435
Target:  5'- cCCCGuCUCCCCcgcaugugauCGGGCcuacguGGGCACg -3'
miRNA:   3'- -GGGUuGAGGGGuu--------GCUUGau----UUCGUG- -5'
18696 3' -49.3 NC_004682.1 + 26471 0.66 0.957435
Target:  5'- gCCGACguucgaCCCGGCG-ACgugGAAGCAg -3'
miRNA:   3'- gGGUUGag----GGGUUGCuUGa--UUUCGUg -5'
18696 3' -49.3 NC_004682.1 + 49391 0.66 0.956156
Target:  5'- gCCCAggugaagguccgacGCUCCCgAGCGAagGCUucAGCc- -3'
miRNA:   3'- -GGGU--------------UGAGGGgUUGCU--UGAuuUCGug -5'
18696 3' -49.3 NC_004682.1 + 34190 0.66 0.953073
Target:  5'- gCCGACUCCaCCAG-GGACUcAGAGUc- -3'
miRNA:   3'- gGGUUGAGG-GGUUgCUUGA-UUUCGug -5'
18696 3' -49.3 NC_004682.1 + 48988 0.66 0.94842
Target:  5'- -gCAGCUCCCaguuGugGAGC---AGCACg -3'
miRNA:   3'- ggGUUGAGGGg---UugCUUGauuUCGUG- -5'
18696 3' -49.3 NC_004682.1 + 19133 0.66 0.94842
Target:  5'- cCCUAGCcggUCCCAACGAaggggACcggGGGGUACa -3'
miRNA:   3'- -GGGUUGa--GGGGUUGCU-----UGa--UUUCGUG- -5'
18696 3' -49.3 NC_004682.1 + 24050 0.66 0.94398
Target:  5'- aCCCGAacgggccgUUCCCCGAUGuguucgaccugaccuACUcAGGCACg -3'
miRNA:   3'- -GGGUU--------GAGGGGUUGCu--------------UGAuUUCGUG- -5'
18696 3' -49.3 NC_004682.1 + 31534 0.66 0.943472
Target:  5'- gCCCAGCgugCgCUCGAUGAcCUGGAGguCg -3'
miRNA:   3'- -GGGUUGa--G-GGGUUGCUuGAUUUCguG- -5'
18696 3' -49.3 NC_004682.1 + 12583 0.66 0.943472
Target:  5'- aCUCAGCUUCgCAACGGAC---AGCGa -3'
miRNA:   3'- -GGGUUGAGGgGUUGCUUGauuUCGUg -5'
18696 3' -49.3 NC_004682.1 + 47887 0.66 0.938223
Target:  5'- uCCCAGCUCUgCCGu---GCUcGAGCGCu -3'
miRNA:   3'- -GGGUUGAGG-GGUugcuUGAuUUCGUG- -5'
18696 3' -49.3 NC_004682.1 + 10403 0.66 0.938223
Target:  5'- aCCCGgaGCUggaCCCCAACGAgagguuGCUGuccGAGCu- -3'
miRNA:   3'- -GGGU--UGA---GGGGUUGCU------UGAU---UUCGug -5'
18696 3' -49.3 NC_004682.1 + 4384 0.67 0.934929
Target:  5'- gCCgAACUCgUCAGCGAucuGCUucgcgaugaucggcaGAAGCGCc -3'
miRNA:   3'- -GGgUUGAGgGGUUGCU---UGA---------------UUUCGUG- -5'
18696 3' -49.3 NC_004682.1 + 33018 0.67 0.932673
Target:  5'- gCCAGCcggucggUCCUGAcCGAGCUGGAGCGu -3'
miRNA:   3'- gGGUUGa------GGGGUU-GCUUGAUUUCGUg -5'
18696 3' -49.3 NC_004682.1 + 5181 0.67 0.926818
Target:  5'- gCCGACgaugCgUGACGGGCUGAAGCAg -3'
miRNA:   3'- gGGUUGag--GgGUUGCUUGAUUUCGUg -5'
18696 3' -49.3 NC_004682.1 + 20177 0.67 0.920659
Target:  5'- uCCCAACacggUUCCCAACGuGCgggucgAccGCACg -3'
miRNA:   3'- -GGGUUG----AGGGGUUGCuUGa-----UuuCGUG- -5'
18696 3' -49.3 NC_004682.1 + 23361 0.67 0.914196
Target:  5'- aCCCGAa-CCCCAacaACGGAcCUGGGGC-Cg -3'
miRNA:   3'- -GGGUUgaGGGGU---UGCUU-GAUUUCGuG- -5'
18696 3' -49.3 NC_004682.1 + 9598 0.67 0.910173
Target:  5'- gCCCAGCUCCUCGcccuUGAcgccgaacagcagccGCUGGGGgACg -3'
miRNA:   3'- -GGGUUGAGGGGUu---GCU---------------UGAUUUCgUG- -5'
18696 3' -49.3 NC_004682.1 + 19719 0.67 0.907431
Target:  5'- gCCUGGCUCCaCCGAgGAgcccGCUGAGccGUACa -3'
miRNA:   3'- -GGGUUGAGG-GGUUgCU----UGAUUU--CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.