miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18697 3' -54.1 NC_004682.1 + 41962 0.66 0.748729
Target:  5'- gGCAcCCGGUUcCUg-CGCGGcCAGCUCg -3'
miRNA:   3'- -UGU-GGCUAGuGAagGCGUCuGUCGAG- -5'
18697 3' -54.1 NC_004682.1 + 44088 0.66 0.738043
Target:  5'- -gACCGAUaCGCguaagcaCCGCAGcgugucuCAGCUCa -3'
miRNA:   3'- ugUGGCUA-GUGaa-----GGCGUCu------GUCGAG- -5'
18697 3' -54.1 NC_004682.1 + 39318 0.66 0.722898
Target:  5'- gACGCUGAgcCGCUUCCGCuugccguuggcgcGGCGGCa- -3'
miRNA:   3'- -UGUGGCUa-GUGAAGGCGu------------CUGUCGag -5'
18697 3' -54.1 NC_004682.1 + 6354 0.66 0.716348
Target:  5'- cCGCCGA-CACgg-CGCGGGCGguGCUCg -3'
miRNA:   3'- uGUGGCUaGUGaagGCGUCUGU--CGAG- -5'
18697 3' -54.1 NC_004682.1 + 23770 0.66 0.716348
Target:  5'- cACGCCGAUCaACUccaCCGUccAGGCGGUg- -3'
miRNA:   3'- -UGUGGCUAG-UGAa--GGCG--UCUGUCGag -5'
18697 3' -54.1 NC_004682.1 + 27545 0.66 0.716348
Target:  5'- cACGCCGuuguccGUCGCgaggUCCGCGagggccgugaacGACAGCg- -3'
miRNA:   3'- -UGUGGC------UAGUGa---AGGCGU------------CUGUCGag -5'
18697 3' -54.1 NC_004682.1 + 28209 0.67 0.672009
Target:  5'- gGCGUCGAUCAgCUUucgacagccgUCGCAGGgGGCUCg -3'
miRNA:   3'- -UGUGGCUAGU-GAA----------GGCGUCUgUCGAG- -5'
18697 3' -54.1 NC_004682.1 + 49324 0.68 0.638299
Target:  5'- gACGCUGAUCACUUuguggucgCCGUAGAUcaucGCUg -3'
miRNA:   3'- -UGUGGCUAGUGAA--------GGCGUCUGu---CGAg -5'
18697 3' -54.1 NC_004682.1 + 5124 0.69 0.548874
Target:  5'- cGCGCCGAUC-CUggcgcgugCUGCGGGCAuCUCc -3'
miRNA:   3'- -UGUGGCUAGuGAa-------GGCGUCUGUcGAG- -5'
18697 3' -54.1 NC_004682.1 + 48249 0.7 0.505523
Target:  5'- gACACCuuGGUCAUUggcgggUCCGCAGAUcagguugcucauGGCUCu -3'
miRNA:   3'- -UGUGG--CUAGUGA------AGGCGUCUG------------UCGAG- -5'
18697 3' -54.1 NC_004682.1 + 8733 0.7 0.49491
Target:  5'- cGCGCCGAaCGCgaggacCgCGCAGACGGCg- -3'
miRNA:   3'- -UGUGGCUaGUGaa----G-GCGUCUGUCGag -5'
18697 3' -54.1 NC_004682.1 + 3126 0.73 0.350463
Target:  5'- uACGggUCGAUCACUggCGCAGGCGGCg- -3'
miRNA:   3'- -UGU--GGCUAGUGAagGCGUCUGUCGag -5'
18697 3' -54.1 NC_004682.1 + 16114 1.1 0.000889
Target:  5'- aACACCGAUCACUUCCGCAGACAGCUCa -3'
miRNA:   3'- -UGUGGCUAGUGAAGGCGUCUGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.