miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18697 5' -52.4 NC_004682.1 + 4803 0.66 0.870378
Target:  5'- gGGAGCaCAUCGuccGGUCGAUcaaCGCGg -3'
miRNA:   3'- gCUUCG-GUAGCucuUCAGCUAc--GCGC- -5'
18697 5' -52.4 NC_004682.1 + 21780 0.66 0.870378
Target:  5'- uGccGCCcagaggCGGGAGGUCGAUG-GCa -3'
miRNA:   3'- gCuuCGGua----GCUCUUCAGCUACgCGc -5'
18697 5' -52.4 NC_004682.1 + 41613 0.66 0.862172
Target:  5'- uCGAAGCC-UCGAucuGGUCGAgacucggagaUGCGUu -3'
miRNA:   3'- -GCUUCGGuAGCUcu-UCAGCU----------ACGCGc -5'
18697 5' -52.4 NC_004682.1 + 15473 0.66 0.862172
Target:  5'- uCGAcGCCAgUGAGAuGgaagCGAUGgGCGa -3'
miRNA:   3'- -GCUuCGGUaGCUCUuCa---GCUACgCGC- -5'
18697 5' -52.4 NC_004682.1 + 5870 0.66 0.862172
Target:  5'- --uGGCUGUUGAGuacGUCGA-GCGCGu -3'
miRNA:   3'- gcuUCGGUAGCUCuu-CAGCUaCGCGC- -5'
18697 5' -52.4 NC_004682.1 + 47406 0.66 0.853716
Target:  5'- gCGAAGCacuaCGAGGAGaCGcgGCaGCGg -3'
miRNA:   3'- -GCUUCGgua-GCUCUUCaGCuaCG-CGC- -5'
18697 5' -52.4 NC_004682.1 + 21557 0.67 0.81757
Target:  5'- aCGAGGCCAcugauacguccuUCGuGGcgggcggugAGUCGAUGCcagGCGu -3'
miRNA:   3'- -GCUUCGGU------------AGCuCU---------UCAGCUACG---CGC- -5'
18697 5' -52.4 NC_004682.1 + 23368 0.67 0.816622
Target:  5'- gCGGAGCCGgucuccuUCGAuccgcUCGAUGCGCu -3'
miRNA:   3'- -GCUUCGGU-------AGCUcuuc-AGCUACGCGc -5'
18697 5' -52.4 NC_004682.1 + 1222 0.67 0.808001
Target:  5'- gGAAGCCGaggGAGucguAGUCGAcgugGCGCa -3'
miRNA:   3'- gCUUCGGUag-CUCu---UCAGCUa---CGCGc -5'
18697 5' -52.4 NC_004682.1 + 36552 0.67 0.778191
Target:  5'- gCGAGGCCGgaaCGAGgcGUaCGcgGaCGCGc -3'
miRNA:   3'- -GCUUCGGUa--GCUCuuCA-GCuaC-GCGC- -5'
18697 5' -52.4 NC_004682.1 + 5181 0.67 0.778191
Target:  5'- uCGgcGCggCGUCGAccacgGggGUCGGUGCGgGu -3'
miRNA:   3'- -GCuuCG--GUAGCU-----CuuCAGCUACGCgC- -5'
18697 5' -52.4 NC_004682.1 + 12847 0.68 0.746966
Target:  5'- gGAGGCCGguuUCGGGgcGUCa--GCGCGc -3'
miRNA:   3'- gCUUCGGU---AGCUCuuCAGcuaCGCGC- -5'
18697 5' -52.4 NC_004682.1 + 18249 0.69 0.714651
Target:  5'- uCGAGGCCGguaUCGAccuggcuGUCGGUGcCGCGc -3'
miRNA:   3'- -GCUUCGGU---AGCUcuu----CAGCUAC-GCGC- -5'
18697 5' -52.4 NC_004682.1 + 5156 0.69 0.681574
Target:  5'- cCGAGGCCAaggcccgCGAGAuccugccGaCGAUGCGUGa -3'
miRNA:   3'- -GCUUCGGUa------GCUCUu------CaGCUACGCGC- -5'
18697 5' -52.4 NC_004682.1 + 41792 0.7 0.636838
Target:  5'- uGGAG-CAUgGAGAAGUCGGccagggcggUGCGUGa -3'
miRNA:   3'- gCUUCgGUAgCUCUUCAGCU---------ACGCGC- -5'
18697 5' -52.4 NC_004682.1 + 4644 0.72 0.494035
Target:  5'- uCGAGGCCAUCGAGAaccccGGaCGggGUGaCGa -3'
miRNA:   3'- -GCUUCGGUAGCUCU-----UCaGCuaCGC-GC- -5'
18697 5' -52.4 NC_004682.1 + 1160 0.73 0.473215
Target:  5'- aGGAGcCCAUCGAgGAAGUgGA-GCGCu -3'
miRNA:   3'- gCUUC-GGUAGCU-CUUCAgCUaCGCGc -5'
18697 5' -52.4 NC_004682.1 + 16151 1.1 0.001621
Target:  5'- uCGAAGCCAUCGAGAAGUCGAUGCGCGg -3'
miRNA:   3'- -GCUUCGGUAGCUCUUCAGCUACGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.