miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18698 3' -57.2 NC_004682.1 + 19551 0.66 0.562332
Target:  5'- cGACCcGGUGGauCUUGCCCuuGCGGGGg -3'
miRNA:   3'- -UUGGuCUACUgcGAGCGGGu-CGUCUC- -5'
18698 3' -57.2 NC_004682.1 + 46875 0.66 0.562332
Target:  5'- -cCCGGAUcGACGggaaguacacCGCCCAGCAGGu -3'
miRNA:   3'- uuGGUCUA-CUGCga--------GCGGGUCGUCUc -5'
18698 3' -57.2 NC_004682.1 + 34758 0.66 0.540597
Target:  5'- gAugCGGgcGACGUucUCGCCUguGGCAGAc -3'
miRNA:   3'- -UugGUCuaCUGCG--AGCGGG--UCGUCUc -5'
18698 3' -57.2 NC_004682.1 + 5432 0.66 0.529834
Target:  5'- gAACCGGgcGuagUGCUCGCgCCAGguGAu -3'
miRNA:   3'- -UUGGUCuaCu--GCGAGCG-GGUCguCUc -5'
18698 3' -57.2 NC_004682.1 + 36346 0.67 0.487643
Target:  5'- --gCGGGUGACguGCUCGaCCCuGCGGAc -3'
miRNA:   3'- uugGUCUACUG--CGAGC-GGGuCGUCUc -5'
18698 3' -57.2 NC_004682.1 + 1967 0.67 0.467146
Target:  5'- uGGCCGucGAUGugGaguccCUCGCCC-GCAGGGc -3'
miRNA:   3'- -UUGGU--CUACugC-----GAGCGGGuCGUCUC- -5'
18698 3' -57.2 NC_004682.1 + 48821 0.67 0.457066
Target:  5'- uGCCGgcGAUGACuuUCGCCCAGgCGGuGa -3'
miRNA:   3'- uUGGU--CUACUGcgAGCGGGUC-GUCuC- -5'
18698 3' -57.2 NC_004682.1 + 31060 0.67 0.457066
Target:  5'- cAGCCcguagaGGAUGucggccuUGCUCGCCCAGUAGu- -3'
miRNA:   3'- -UUGG------UCUACu------GCGAGCGGGUCGUCuc -5'
18698 3' -57.2 NC_004682.1 + 733 0.67 0.457066
Target:  5'- --aCGGAUGugGUcgaccucggUCGCCUGGguGAGg -3'
miRNA:   3'- uugGUCUACugCG---------AGCGGGUCguCUC- -5'
18698 3' -57.2 NC_004682.1 + 42980 0.68 0.447103
Target:  5'- gAACCGGAaucUGccGCGCUCGCCCuuGaUGGAGa -3'
miRNA:   3'- -UUGGUCU---AC--UGCGAGCGGGu-C-GUCUC- -5'
18698 3' -57.2 NC_004682.1 + 18643 0.68 0.447103
Target:  5'- cGCCAGA-GACGCU-GCCCGccaugcucuuccGCAGAu -3'
miRNA:   3'- uUGGUCUaCUGCGAgCGGGU------------CGUCUc -5'
18698 3' -57.2 NC_004682.1 + 27254 0.68 0.417961
Target:  5'- aGACCGGcgcgaaGugGgUCGCCgAGCAGGGc -3'
miRNA:   3'- -UUGGUCua----CugCgAGCGGgUCGUCUC- -5'
18698 3' -57.2 NC_004682.1 + 48257 0.68 0.417961
Target:  5'- gGACCAGA---UGCUCGCCCGGUg--- -3'
miRNA:   3'- -UUGGUCUacuGCGAGCGGGUCGucuc -5'
18698 3' -57.2 NC_004682.1 + 12177 0.69 0.380961
Target:  5'- cGCCAGGUaGGCGUU-GCCCuGCGGAc -3'
miRNA:   3'- uUGGUCUA-CUGCGAgCGGGuCGUCUc -5'
18698 3' -57.2 NC_004682.1 + 38514 0.69 0.372059
Target:  5'- uGAUCGcGAUGAUcggGCUCuGCCgCAGCAGAGc -3'
miRNA:   3'- -UUGGU-CUACUG---CGAG-CGG-GUCGUCUC- -5'
18698 3' -57.2 NC_004682.1 + 39759 0.69 0.3633
Target:  5'- gGGCCGGAUGACGCU-GCCgCAGUu--- -3'
miRNA:   3'- -UUGGUCUACUGCGAgCGG-GUCGucuc -5'
18698 3' -57.2 NC_004682.1 + 46385 0.7 0.306061
Target:  5'- gAGCCAGAgcaGCGCgcuccuugUCGCCCcGGUAGAGg -3'
miRNA:   3'- -UUGGUCUac-UGCG--------AGCGGG-UCGUCUC- -5'
18698 3' -57.2 NC_004682.1 + 12255 0.71 0.269573
Target:  5'- cGGCUcGGUGACGUU-GUCCAGCAGGGu -3'
miRNA:   3'- -UUGGuCUACUGCGAgCGGGUCGUCUC- -5'
18698 3' -57.2 NC_004682.1 + 24696 0.73 0.196334
Target:  5'- cACCGGAgcccgUGGCGUUCGCCgGGuCGGAGu -3'
miRNA:   3'- uUGGUCU-----ACUGCGAGCGGgUC-GUCUC- -5'
18698 3' -57.2 NC_004682.1 + 18523 0.74 0.180962
Target:  5'- gAGCCAGAUGGC-CUCGCUC-GCGGAc -3'
miRNA:   3'- -UUGGUCUACUGcGAGCGGGuCGUCUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.