Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18698 | 3' | -57.2 | NC_004682.1 | + | 19551 | 0.66 | 0.562332 |
Target: 5'- cGACCcGGUGGauCUUGCCCuuGCGGGGg -3' miRNA: 3'- -UUGGuCUACUgcGAGCGGGu-CGUCUC- -5' |
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18698 | 3' | -57.2 | NC_004682.1 | + | 5432 | 0.66 | 0.529834 |
Target: 5'- gAACCGGgcGuagUGCUCGCgCCAGguGAu -3' miRNA: 3'- -UUGGUCuaCu--GCGAGCG-GGUCguCUc -5' |
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18698 | 3' | -57.2 | NC_004682.1 | + | 34758 | 0.66 | 0.540597 |
Target: 5'- gAugCGGgcGACGUucUCGCCUguGGCAGAc -3' miRNA: 3'- -UugGUCuaCUGCG--AGCGGG--UCGUCUc -5' |
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18698 | 3' | -57.2 | NC_004682.1 | + | 46875 | 0.66 | 0.562332 |
Target: 5'- -cCCGGAUcGACGggaaguacacCGCCCAGCAGGu -3' miRNA: 3'- uuGGUCUA-CUGCga--------GCGGGUCGUCUc -5' |
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18698 | 3' | -57.2 | NC_004682.1 | + | 733 | 0.67 | 0.457066 |
Target: 5'- --aCGGAUGugGUcgaccucggUCGCCUGGguGAGg -3' miRNA: 3'- uugGUCUACugCG---------AGCGGGUCguCUC- -5' |
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18698 | 3' | -57.2 | NC_004682.1 | + | 1967 | 0.67 | 0.467146 |
Target: 5'- uGGCCGucGAUGugGaguccCUCGCCC-GCAGGGc -3' miRNA: 3'- -UUGGU--CUACugC-----GAGCGGGuCGUCUC- -5' |
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18698 | 3' | -57.2 | NC_004682.1 | + | 36346 | 0.67 | 0.487643 |
Target: 5'- --gCGGGUGACguGCUCGaCCCuGCGGAc -3' miRNA: 3'- uugGUCUACUG--CGAGC-GGGuCGUCUc -5' |
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18698 | 3' | -57.2 | NC_004682.1 | + | 31060 | 0.67 | 0.457066 |
Target: 5'- cAGCCcguagaGGAUGucggccuUGCUCGCCCAGUAGu- -3' miRNA: 3'- -UUGG------UCUACu------GCGAGCGGGUCGUCuc -5' |
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18698 | 3' | -57.2 | NC_004682.1 | + | 48821 | 0.67 | 0.457066 |
Target: 5'- uGCCGgcGAUGACuuUCGCCCAGgCGGuGa -3' miRNA: 3'- uUGGU--CUACUGcgAGCGGGUC-GUCuC- -5' |
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18698 | 3' | -57.2 | NC_004682.1 | + | 42980 | 0.68 | 0.447103 |
Target: 5'- gAACCGGAaucUGccGCGCUCGCCCuuGaUGGAGa -3' miRNA: 3'- -UUGGUCU---AC--UGCGAGCGGGu-C-GUCUC- -5' |
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18698 | 3' | -57.2 | NC_004682.1 | + | 48257 | 0.68 | 0.417961 |
Target: 5'- gGACCAGA---UGCUCGCCCGGUg--- -3' miRNA: 3'- -UUGGUCUacuGCGAGCGGGUCGucuc -5' |
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18698 | 3' | -57.2 | NC_004682.1 | + | 18643 | 0.68 | 0.447103 |
Target: 5'- cGCCAGA-GACGCU-GCCCGccaugcucuuccGCAGAu -3' miRNA: 3'- uUGGUCUaCUGCGAgCGGGU------------CGUCUc -5' |
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18698 | 3' | -57.2 | NC_004682.1 | + | 27254 | 0.68 | 0.417961 |
Target: 5'- aGACCGGcgcgaaGugGgUCGCCgAGCAGGGc -3' miRNA: 3'- -UUGGUCua----CugCgAGCGGgUCGUCUC- -5' |
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18698 | 3' | -57.2 | NC_004682.1 | + | 38514 | 0.69 | 0.372059 |
Target: 5'- uGAUCGcGAUGAUcggGCUCuGCCgCAGCAGAGc -3' miRNA: 3'- -UUGGU-CUACUG---CGAG-CGG-GUCGUCUC- -5' |
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18698 | 3' | -57.2 | NC_004682.1 | + | 12177 | 0.69 | 0.380961 |
Target: 5'- cGCCAGGUaGGCGUU-GCCCuGCGGAc -3' miRNA: 3'- uUGGUCUA-CUGCGAgCGGGuCGUCUc -5' |
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18698 | 3' | -57.2 | NC_004682.1 | + | 39759 | 0.69 | 0.3633 |
Target: 5'- gGGCCGGAUGACGCU-GCCgCAGUu--- -3' miRNA: 3'- -UUGGUCUACUGCGAgCGG-GUCGucuc -5' |
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18698 | 3' | -57.2 | NC_004682.1 | + | 46385 | 0.7 | 0.306061 |
Target: 5'- gAGCCAGAgcaGCGCgcuccuugUCGCCCcGGUAGAGg -3' miRNA: 3'- -UUGGUCUac-UGCG--------AGCGGG-UCGUCUC- -5' |
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18698 | 3' | -57.2 | NC_004682.1 | + | 12255 | 0.71 | 0.269573 |
Target: 5'- cGGCUcGGUGACGUU-GUCCAGCAGGGu -3' miRNA: 3'- -UUGGuCUACUGCGAgCGGGUCGUCUC- -5' |
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18698 | 3' | -57.2 | NC_004682.1 | + | 24696 | 0.73 | 0.196334 |
Target: 5'- cACCGGAgcccgUGGCGUUCGCCgGGuCGGAGu -3' miRNA: 3'- uUGGUCU-----ACUGCGAGCGGgUC-GUCUC- -5' |
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18698 | 3' | -57.2 | NC_004682.1 | + | 18523 | 0.74 | 0.180962 |
Target: 5'- gAGCCAGAUGGC-CUCGCUC-GCGGAc -3' miRNA: 3'- -UUGGUCUACUGcGAGCGGGuCGUCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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