miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18698 5' -53.7 NC_004682.1 + 6113 0.66 0.771425
Target:  5'- aCGaUGCUGGcccGCUACGCGgccUACGCCaagGCg -3'
miRNA:   3'- -GCgACGACU---UGGUGUGC---AUGCGGa--UG- -5'
18698 5' -53.7 NC_004682.1 + 6753 0.66 0.771425
Target:  5'- aCGCgcacGCUGGug-ACAUGUACGCCUcCa -3'
miRNA:   3'- -GCGa---CGACUuggUGUGCAUGCGGAuG- -5'
18698 5' -53.7 NC_004682.1 + 10009 0.66 0.761031
Target:  5'- uCGCUGCgucuGCCugGCGgcgUACGUCgGCg -3'
miRNA:   3'- -GCGACGacu-UGGugUGC---AUGCGGaUG- -5'
18698 5' -53.7 NC_004682.1 + 8950 0.66 0.761031
Target:  5'- uGCUGggGGACCG--UG-ACGCCUACg -3'
miRNA:   3'- gCGACgaCUUGGUguGCaUGCGGAUG- -5'
18698 5' -53.7 NC_004682.1 + 17658 0.66 0.73984
Target:  5'- aGCgUGgUGAACgCugGCGUgaGCGCCgugACg -3'
miRNA:   3'- gCG-ACgACUUG-GugUGCA--UGCGGa--UG- -5'
18698 5' -53.7 NC_004682.1 + 24273 0.66 0.73984
Target:  5'- aCGCUGCaacGCCGCcaagACGagcUACGUCUACg -3'
miRNA:   3'- -GCGACGacuUGGUG----UGC---AUGCGGAUG- -5'
18698 5' -53.7 NC_004682.1 + 10584 0.66 0.73984
Target:  5'- gCGCgacCUGGGCCACGCcUGCGUCa-- -3'
miRNA:   3'- -GCGac-GACUUGGUGUGcAUGCGGaug -5'
18698 5' -53.7 NC_004682.1 + 5989 0.67 0.729067
Target:  5'- aGCUGCUGGAacgcCCACGacuuCGgguggACGCCgucGCg -3'
miRNA:   3'- gCGACGACUU----GGUGU----GCa----UGCGGa--UG- -5'
18698 5' -53.7 NC_004682.1 + 3086 0.67 0.718194
Target:  5'- gCGUUGCUG-ACCACGgGaugucgACGCCg-- -3'
miRNA:   3'- -GCGACGACuUGGUGUgCa-----UGCGGaug -5'
18698 5' -53.7 NC_004682.1 + 41552 0.67 0.670575
Target:  5'- uCGCUGaUGGACUaccuacacgacaugGCGCGgucgacgaGCGCCUGCg -3'
miRNA:   3'- -GCGACgACUUGG--------------UGUGCa-------UGCGGAUG- -5'
18698 5' -53.7 NC_004682.1 + 16392 0.68 0.629002
Target:  5'- gCGCgaGCUGAACCAgAUG-ACGCUcGCc -3'
miRNA:   3'- -GCGa-CGACUUGGUgUGCaUGCGGaUG- -5'
18698 5' -53.7 NC_004682.1 + 4713 0.69 0.606511
Target:  5'- aGgUGCUGGAUCGC-CGUGUGCCgcagGCg -3'
miRNA:   3'- gCgACGACUUGGUGuGCAUGCGGa---UG- -5'
18698 5' -53.7 NC_004682.1 + 39194 0.69 0.595296
Target:  5'- gGUUGUccagguagucgaUGAACCGCugGaACGCCUcGCg -3'
miRNA:   3'- gCGACG------------ACUUGGUGugCaUGCGGA-UG- -5'
18698 5' -53.7 NC_004682.1 + 23056 0.7 0.55085
Target:  5'- aCGUUGCgacGAauccACCACGCGaGCGCCa-- -3'
miRNA:   3'- -GCGACGa--CU----UGGUGUGCaUGCGGaug -5'
18698 5' -53.7 NC_004682.1 + 16741 0.7 0.55085
Target:  5'- cCGCUGCcgcccGAgcgcauGCCGCGCa-GCGCCUGCu -3'
miRNA:   3'- -GCGACGa----CU------UGGUGUGcaUGCGGAUG- -5'
18698 5' -53.7 NC_004682.1 + 25349 0.7 0.539886
Target:  5'- aCGCgccaCUGGGCCACGcCGUGgGCCUugACg -3'
miRNA:   3'- -GCGac--GACUUGGUGU-GCAUgCGGA--UG- -5'
18698 5' -53.7 NC_004682.1 + 3211 0.7 0.528997
Target:  5'- gGCUGCUGcGCCGC-C-UGCGCCa-- -3'
miRNA:   3'- gCGACGACuUGGUGuGcAUGCGGaug -5'
18698 5' -53.7 NC_004682.1 + 26001 0.7 0.518189
Target:  5'- gGCUGgaGGcgcaACCGCGcCGUGCGUCUGg -3'
miRNA:   3'- gCGACgaCU----UGGUGU-GCAUGCGGAUg -5'
18698 5' -53.7 NC_004682.1 + 36557 0.71 0.445357
Target:  5'- gCGCUGCgaggccgGAACgAgGCGUACGCggACg -3'
miRNA:   3'- -GCGACGa------CUUGgUgUGCAUGCGgaUG- -5'
18698 5' -53.7 NC_004682.1 + 24028 0.72 0.425608
Target:  5'- aGCUGCUGGG-CGCugGUGCGgaCCUGg -3'
miRNA:   3'- gCGACGACUUgGUGugCAUGC--GGAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.