Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18698 | 5' | -53.7 | NC_004682.1 | + | 33506 | 0.73 | 0.343603 |
Target: 5'- uGCUGCgGGGCCAgcuuCGCGaACGCCUGg -3' miRNA: 3'- gCGACGaCUUGGU----GUGCaUGCGGAUg -5' |
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18698 | 5' | -53.7 | NC_004682.1 | + | 36557 | 0.71 | 0.445357 |
Target: 5'- gCGCUGCgaggccgGAACgAgGCGUACGCggACg -3' miRNA: 3'- -GCGACGa------CUUGgUgUGCAUGCGgaUG- -5' |
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18698 | 5' | -53.7 | NC_004682.1 | + | 39194 | 0.69 | 0.595296 |
Target: 5'- gGUUGUccagguagucgaUGAACCGCugGaACGCCUcGCg -3' miRNA: 3'- gCGACG------------ACUUGGUGugCaUGCGGA-UG- -5' |
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18698 | 5' | -53.7 | NC_004682.1 | + | 41552 | 0.67 | 0.670575 |
Target: 5'- uCGCUGaUGGACUaccuacacgacaugGCGCGgucgacgaGCGCCUGCg -3' miRNA: 3'- -GCGACgACUUGG--------------UGUGCa-------UGCGGAUG- -5' |
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18698 | 5' | -53.7 | NC_004682.1 | + | 47039 | 0.76 | 0.246356 |
Target: 5'- aGCUGCUGcGCCACGCGgaggAUGUCguggGCa -3' miRNA: 3'- gCGACGACuUGGUGUGCa---UGCGGa---UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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