Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 18698 | 5' | -53.7 | NC_004682.1 | + | 5989 | 0.67 | 0.729067 |
|
Target: 5'- aGCUGCUGGAacgcCCACGacuuCGgguggACGCCgucGCg -3' miRNA: 3'- gCGACGACUU----GGUGU----GCa----UGCGGa--UG- -5' |
|||||||
| 18698 | 5' | -53.7 | NC_004682.1 | + | 5036 | 0.75 | 0.295584 |
|
Target: 5'- gCGCcacGCUGAucccgccgaaggGCUACGCGUACGCCgACg -3' miRNA: 3'- -GCGa--CGACU------------UGGUGUGCAUGCGGaUG- -5' |
|||||||
| 18698 | 5' | -53.7 | NC_004682.1 | + | 4713 | 0.69 | 0.606511 |
|
Target: 5'- aGgUGCUGGAUCGC-CGUGUGCCgcagGCg -3' miRNA: 3'- gCgACGACUUGGUGuGCAUGCGGa---UG- -5' |
|||||||
| 18698 | 5' | -53.7 | NC_004682.1 | + | 3211 | 0.7 | 0.528997 |
|
Target: 5'- gGCUGCUGcGCCGC-C-UGCGCCa-- -3' miRNA: 3'- gCGACGACuUGGUGuGcAUGCGGaug -5' |
|||||||
| 18698 | 5' | -53.7 | NC_004682.1 | + | 3086 | 0.67 | 0.718194 |
|
Target: 5'- gCGUUGCUG-ACCACGgGaugucgACGCCg-- -3' miRNA: 3'- -GCGACGACuUGGUGUgCa-----UGCGGaug -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home