miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18699 5' -56.1 NC_004682.1 + 34518 0.66 0.632516
Target:  5'- gAGGACGguGGCACCcacgggGACcaucGCCAagauGCCGGg -3'
miRNA:   3'- -UCCUGU--UCGUGGa-----CUGc---CGGU----UGGUC- -5'
18699 5' -56.1 NC_004682.1 + 42548 0.66 0.632516
Target:  5'- -cGGC-GGCGCCUcuGCGGCCAACUg- -3'
miRNA:   3'- ucCUGuUCGUGGAc-UGCCGGUUGGuc -5'
18699 5' -56.1 NC_004682.1 + 40778 0.66 0.621415
Target:  5'- uGGGACGAGCACggcaaGCGcGCCGgggucauccgcaACCAGa -3'
miRNA:   3'- -UCCUGUUCGUGgac--UGC-CGGU------------UGGUC- -5'
18699 5' -56.1 NC_004682.1 + 43701 0.66 0.610323
Target:  5'- uGGAUc-GCcCCUGACGGCaccCCAGg -3'
miRNA:   3'- uCCUGuuCGuGGACUGCCGguuGGUC- -5'
18699 5' -56.1 NC_004682.1 + 24932 0.67 0.588207
Target:  5'- cGGGACAccguucuuguagAGCAUCgGAgCGGUCuuCCAGg -3'
miRNA:   3'- -UCCUGU------------UCGUGGaCU-GCCGGuuGGUC- -5'
18699 5' -56.1 NC_004682.1 + 13728 0.67 0.56624
Target:  5'- cGGugAAGCGguaCUGAgaUGGCCAggcugaucgGCCAGa -3'
miRNA:   3'- uCCugUUCGUg--GACU--GCCGGU---------UGGUC- -5'
18699 5' -56.1 NC_004682.1 + 16345 0.67 0.56624
Target:  5'- uGGGGCc-GCGCCcucaacGACGGUCGACUGGc -3'
miRNA:   3'- -UCCUGuuCGUGGa-----CUGCCGGUUGGUC- -5'
18699 5' -56.1 NC_004682.1 + 23874 0.67 0.56624
Target:  5'- cGGucaACAAGUuccuggGCCUGACGGgcaCCGGCCAc -3'
miRNA:   3'- uCC---UGUUCG------UGGACUGCC---GGUUGGUc -5'
18699 5' -56.1 NC_004682.1 + 48190 0.67 0.56624
Target:  5'- cGGGCGAGCAUCUGGucccaUGuCuCGACCAGg -3'
miRNA:   3'- uCCUGUUCGUGGACU-----GCcG-GUUGGUC- -5'
18699 5' -56.1 NC_004682.1 + 13573 0.67 0.56624
Target:  5'- cGGACuggccuuGCACCUGGaaucgcgccuUGGCCGggauGCCGGu -3'
miRNA:   3'- uCCUGuu-----CGUGGACU----------GCCGGU----UGGUC- -5'
18699 5' -56.1 NC_004682.1 + 30769 0.67 0.56624
Target:  5'- -cGACGAGgGCCaauUGAUGGCCucagucgacuACCAGg -3'
miRNA:   3'- ucCUGUUCgUGG---ACUGCCGGu---------UGGUC- -5'
18699 5' -56.1 NC_004682.1 + 2544 0.67 0.56624
Target:  5'- uGGGGCcuuGGGCACCUG-UGGC--ACCGGu -3'
miRNA:   3'- -UCCUG---UUCGUGGACuGCCGguUGGUC- -5'
18699 5' -56.1 NC_004682.1 + 6309 0.67 0.555334
Target:  5'- cGGucCAcGGCACCgGACaGGCCGACCc- -3'
miRNA:   3'- uCCu-GU-UCGUGGaCUG-CCGGUUGGuc -5'
18699 5' -56.1 NC_004682.1 + 37546 0.67 0.533716
Target:  5'- aAGGGCAAGCAguuCCUGGaucaGGuCCGGgCGGu -3'
miRNA:   3'- -UCCUGUUCGU---GGACUg---CC-GGUUgGUC- -5'
18699 5' -56.1 NC_004682.1 + 18419 0.68 0.523019
Target:  5'- cAGGGC-AGCAUCguccaGACGGCCAAggAGa -3'
miRNA:   3'- -UCCUGuUCGUGGa----CUGCCGGUUggUC- -5'
18699 5' -56.1 NC_004682.1 + 39292 0.68 0.491453
Target:  5'- aGGGACGAGCGCgaGGCGuuCCAGCg-- -3'
miRNA:   3'- -UCCUGUUCGUGgaCUGCc-GGUUGguc -5'
18699 5' -56.1 NC_004682.1 + 28385 0.68 0.491453
Target:  5'- gAGGGCAcguacuGCACCcugGACGGCCcGCaGGa -3'
miRNA:   3'- -UCCUGUu-----CGUGGa--CUGCCGGuUGgUC- -5'
18699 5' -56.1 NC_004682.1 + 417 0.68 0.470906
Target:  5'- gGGGGC-GGCuCCUcgGAgGGCCgAGCCAGg -3'
miRNA:   3'- -UCCUGuUCGuGGA--CUgCCGG-UUGGUC- -5'
18699 5' -56.1 NC_004682.1 + 6051 0.68 0.467861
Target:  5'- cGGAuCAGGCccuugcaguacuCCUGGCcgaacuuGGCCAGCCAGc -3'
miRNA:   3'- uCCU-GUUCGu-----------GGACUG-------CCGGUUGGUC- -5'
18699 5' -56.1 NC_004682.1 + 26743 0.69 0.460797
Target:  5'- gAGGACAuggcggcgaAGCugCUcGACGGCUggUCGu -3'
miRNA:   3'- -UCCUGU---------UCGugGA-CUGCCGGuuGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.