miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
187 3' -55.4 AC_000007.1 + 31760 0.66 0.593101
Target:  5'- ---aACGGGCGGUGGCAuGCGUa---- -3'
miRNA:   3'- gaagUGCCUGUCACCGU-CGCAcaggg -5'
187 3' -55.4 AC_000007.1 + 25374 0.66 0.593101
Target:  5'- --cCAUGGGCGuGUGGCAGCaaugCCUg -3'
miRNA:   3'- gaaGUGCCUGU-CACCGUCGcacaGGG- -5'
187 3' -55.4 AC_000007.1 + 3852 0.67 0.537512
Target:  5'- --cCGCGGGCGGUGGCugcAGCGg--CUg -3'
miRNA:   3'- gaaGUGCCUGUCACCG---UCGCacaGGg -5'
187 3' -55.4 AC_000007.1 + 17577 0.67 0.525507
Target:  5'- --gCACGGGCuggcgacggcgacGGcGGCGGCGgGUUCCa -3'
miRNA:   3'- gaaGUGCCUG-------------UCaCCGUCGCaCAGGG- -5'
187 3' -55.4 AC_000007.1 + 9111 0.68 0.494371
Target:  5'- -----aGGGUGGUGGCGGUGUGUUCUg -3'
miRNA:   3'- gaagugCCUGUCACCGUCGCACAGGG- -5'
187 3' -55.4 AC_000007.1 + 27982 0.68 0.463078
Target:  5'- --cCGCGGGCAaagcacuuGUGGCGGCGgcaugGUCg- -3'
miRNA:   3'- gaaGUGCCUGU--------CACCGUCGCa----CAGgg -5'
187 3' -55.4 AC_000007.1 + 7688 0.68 0.449843
Target:  5'- -gUCACGGGCcauuagcauuugcaGGUGGUcGCGaaagGUCCUa -3'
miRNA:   3'- gaAGUGCCUG--------------UCACCGuCGCa---CAGGG- -5'
187 3' -55.4 AC_000007.1 + 8525 0.7 0.367063
Target:  5'- ---gGCGGGCGGUgGGCcgcgGGgGUGUCCUu -3'
miRNA:   3'- gaagUGCCUGUCA-CCG----UCgCACAGGG- -5'
187 3' -55.4 AC_000007.1 + 14195 0.72 0.264178
Target:  5'- --gCGCGGcgcCAGUGGCGGCGgcgcuggGUUCCc -3'
miRNA:   3'- gaaGUGCCu--GUCACCGUCGCa------CAGGG- -5'
187 3' -55.4 AC_000007.1 + 13118 0.74 0.209849
Target:  5'- -cUCGCGGuACAGUGuCAGCaagugaccuagguauGUGUCCCg -3'
miRNA:   3'- gaAGUGCC-UGUCACcGUCG---------------CACAGGG- -5'
187 3' -55.4 AC_000007.1 + 13016 1.13 0.000315
Target:  5'- cCUUCACGGACAGUGGCAGCGUGUCCCg -3'
miRNA:   3'- -GAAGUGCCUGUCACCGUCGCACAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.