miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18700 3' -53.9 NC_004682.1 + 41271 0.66 0.78088
Target:  5'- cCGACcgGCCACC-ACGGUUcuucaccguggagacCCGCAGGg -3'
miRNA:   3'- aGUUG--CGGUGGuUGCCGAa--------------GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 11867 0.66 0.779865
Target:  5'- aCGACGCCGa-GACGGCaccggUCCaGUggGg -3'
miRNA:   3'- aGUUGCGGUggUUGCCGa----AGG-CGuuC- -5'
18700 3' -53.9 NC_004682.1 + 36029 0.66 0.779865
Target:  5'- -gAACGCcucauguaCugCGGCGGCgaggCCGCAAa -3'
miRNA:   3'- agUUGCG--------GugGUUGCCGaa--GGCGUUc -5'
18700 3' -53.9 NC_004682.1 + 31224 0.66 0.779865
Target:  5'- cCGcCGgCACCAGCGggaucaGCUUCUGCAGc -3'
miRNA:   3'- aGUuGCgGUGGUUGC------CGAAGGCGUUc -5'
18700 3' -53.9 NC_004682.1 + 28773 0.66 0.778849
Target:  5'- cCGcCGCCGCCGcgaguggGCGGCaUCgGCAc- -3'
miRNA:   3'- aGUuGCGGUGGU-------UGCCGaAGgCGUuc -5'
18700 3' -53.9 NC_004682.1 + 13129 0.66 0.769631
Target:  5'- aCAA-GCCGCagAACGGCaUCCGCu-- -3'
miRNA:   3'- aGUUgCGGUGg-UUGCCGaAGGCGuuc -5'
18700 3' -53.9 NC_004682.1 + 27871 0.66 0.759249
Target:  5'- -gAAgGCCAgCCcgGAgGGCUUCCGCuAGu -3'
miRNA:   3'- agUUgCGGU-GG--UUgCCGAAGGCGuUC- -5'
18700 3' -53.9 NC_004682.1 + 26731 0.66 0.759249
Target:  5'- gCGAaGCUGCuCGACGGCUggucguucaUCCGCAu- -3'
miRNA:   3'- aGUUgCGGUG-GUUGCCGA---------AGGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 49265 0.66 0.759249
Target:  5'- aCAugGCCAgCCucaAGCGGagcaaugaCCGCAAGg -3'
miRNA:   3'- aGUugCGGU-GG---UUGCCgaa-----GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 26265 0.66 0.758204
Target:  5'- -gGACGCCGCucaacugCAACGGCaUCUcgauGCGGGg -3'
miRNA:   3'- agUUGCGGUG-------GUUGCCGaAGG----CGUUC- -5'
18700 3' -53.9 NC_004682.1 + 33795 0.66 0.748733
Target:  5'- -gAAgGCCccgGCCAagGCGGCUcCCGcCAAGg -3'
miRNA:   3'- agUUgCGG---UGGU--UGCCGAaGGC-GUUC- -5'
18700 3' -53.9 NC_004682.1 + 33449 0.66 0.748733
Target:  5'- uUCGACugccucuggguGCCACCAcccCGGCUgCCGCc-- -3'
miRNA:   3'- -AGUUG-----------CGGUGGUu--GCCGAaGGCGuuc -5'
18700 3' -53.9 NC_004682.1 + 16324 0.66 0.748733
Target:  5'- aCAcCGCgACCAGCGGUcgCuCGCAu- -3'
miRNA:   3'- aGUuGCGgUGGUUGCCGaaG-GCGUuc -5'
18700 3' -53.9 NC_004682.1 + 6137 0.66 0.727342
Target:  5'- --uACGCCAaggcguaCGACGGCgggccgCUGCGAGu -3'
miRNA:   3'- aguUGCGGUg------GUUGCCGaa----GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 352 0.66 0.727342
Target:  5'- cCGAggaGCCGCCcccaAGCGGCUccccUCCGgGAGc -3'
miRNA:   3'- aGUUg--CGGUGG----UUGCCGA----AGGCgUUC- -5'
18700 3' -53.9 NC_004682.1 + 15959 0.66 0.727342
Target:  5'- cCAACGa-ACUAagcACGGCagaUCCGCAAGg -3'
miRNA:   3'- aGUUGCggUGGU---UGCCGa--AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 27465 0.66 0.723014
Target:  5'- cCGugGCCACCcguacCGGCgauagaauccucaUCUGCAAGu -3'
miRNA:   3'- aGUugCGGUGGuu---GCCGa------------AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 20768 0.67 0.716494
Target:  5'- uUCAugGaUCACUAcCGGgUggUCCGCGAGg -3'
miRNA:   3'- -AGUugC-GGUGGUuGCCgA--AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 30252 0.67 0.716494
Target:  5'- aUCAGCGCCuCCc-CGGUcacgUCGCGAGa -3'
miRNA:   3'- -AGUUGCGGuGGuuGCCGaa--GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 10204 0.67 0.705558
Target:  5'- --uACGCCGCCcaacaGGCGGUgaucucgUCCGCGc- -3'
miRNA:   3'- aguUGCGGUGG-----UUGCCGa------AGGCGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.