miRNA display CGI


Results 61 - 68 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18700 3' -53.9 NC_004682.1 + 21185 0.74 0.335038
Target:  5'- gUCGGCGCUACCuccACGGCgaagacCCGCAc- -3'
miRNA:   3'- -AGUUGCGGUGGu--UGCCGaa----GGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 29321 0.74 0.335038
Target:  5'- uUCAuCGCCGCCGuccACGGCUgUCuCGCAGa -3'
miRNA:   3'- -AGUuGCGGUGGU---UGCCGA-AG-GCGUUc -5'
18700 3' -53.9 NC_004682.1 + 12812 0.79 0.159512
Target:  5'- cCGACGCCGCCAgcgaGCGGCUcagaagcCCGCAGa -3'
miRNA:   3'- aGUUGCGGUGGU----UGCCGAa------GGCGUUc -5'
18700 3' -53.9 NC_004682.1 + 33491 0.79 0.159512
Target:  5'- ---cCGCCGCCAGCGGCcugCUGCGGGg -3'
miRNA:   3'- aguuGCGGUGGUUGCCGaa-GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 18092 0.8 0.13474
Target:  5'- aCAACGCCACCGAUGGUggcugCCGCcuGAGc -3'
miRNA:   3'- aGUUGCGGUGGUUGCCGaa---GGCG--UUC- -5'
18700 3' -53.9 NC_004682.1 + 44802 0.8 0.123726
Target:  5'- aCGugGCCACCGGCGGCgUCgGCAu- -3'
miRNA:   3'- aGUugCGGUGGUUGCCGaAGgCGUuc -5'
18700 3' -53.9 NC_004682.1 + 24143 0.82 0.098317
Target:  5'- aCAAgGUCGCCAACGGUgaCCGCGAGg -3'
miRNA:   3'- aGUUgCGGUGGUUGCCGaaGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 16624 1.09 0.001207
Target:  5'- gUCAACGCCACCAACGGCUUCCGCAAGu -3'
miRNA:   3'- -AGUUGCGGUGGUUGCCGAAGGCGUUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.