Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18700 | 3' | -53.9 | NC_004682.1 | + | 26244 | 0.7 | 0.517213 |
Target: 5'- cUCggUGCCGuCC-GCGaGCUUCCGguGGg -3' miRNA: 3'- -AGuuGCGGU-GGuUGC-CGAAGGCguUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 44132 | 0.7 | 0.495964 |
Target: 5'- cCAcCGCCugCGGCGGCUUCacaacauCAAGg -3' miRNA: 3'- aGUuGCGGugGUUGCCGAAGgc-----GUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 34976 | 0.7 | 0.506541 |
Target: 5'- -gAugGUCGCCAACGGCgagCCGgGGu -3' miRNA: 3'- agUugCGGUGGUUGCCGaa-GGCgUUc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 27645 | 0.69 | 0.560719 |
Target: 5'- -aGGCGa-ACCAGCGGCUcugCCGCAGc -3' miRNA: 3'- agUUGCggUGGUUGCCGAa--GGCGUUc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 46453 | 0.69 | 0.582859 |
Target: 5'- -gAGCGCgCugCucUGGCUcUCCGCGAGg -3' miRNA: 3'- agUUGCG-GugGuuGCCGA-AGGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 12069 | 0.69 | 0.593997 |
Target: 5'- gUCGAUGCCGugGAUGGCagCCGCGu- -3' miRNA: 3'- -AGUUGCGGUggUUGCCGaaGGCGUuc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 27497 | 0.69 | 0.593997 |
Target: 5'- -gAACGCCagugcGCCGACGGCgauugugCCGCc-- -3' miRNA: 3'- agUUGCGG-----UGGUUGCCGaa-----GGCGuuc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 43986 | 0.69 | 0.593997 |
Target: 5'- ----aGCCGCC--UGGCUcCCGCAGGg -3' miRNA: 3'- aguugCGGUGGuuGCCGAaGGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 36643 | 0.69 | 0.582859 |
Target: 5'- aCGACuCCGaCGGCGGCaagCCGCAGGg -3' miRNA: 3'- aGUUGcGGUgGUUGCCGaa-GGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 12697 | 0.69 | 0.605169 |
Target: 5'- aCAGgGCCAaCGGCGGCUU-CGCGAc -3' miRNA: 3'- aGUUgCGGUgGUUGCCGAAgGCGUUc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 36560 | 0.69 | 0.560719 |
Target: 5'- ---uCGCCGCCcuGCGGCUUgCCGCc-- -3' miRNA: 3'- aguuGCGGUGGu-UGCCGAA-GGCGuuc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 9665 | 0.69 | 0.571763 |
Target: 5'- -gGACGCCcUCGACGcGCUggaUCGCAAGg -3' miRNA: 3'- agUUGCGGuGGUUGC-CGAa--GGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 24278 | 0.69 | 0.582859 |
Target: 5'- gCAACGCCGCCAagACGaGCUacgucuaCGCGAu -3' miRNA: 3'- aGUUGCGGUGGU--UGC-CGAag-----GCGUUc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 5116 | 0.69 | 0.560719 |
Target: 5'- gUCGACGCCgcGCCGAUccuGGCgcgugCUGCGGGc -3' miRNA: 3'- -AGUUGCGG--UGGUUG---CCGaa---GGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 12332 | 0.69 | 0.593997 |
Target: 5'- gUCAACGgCACCGuUGGCaaCCGCGu- -3' miRNA: 3'- -AGUUGCgGUGGUuGCCGaaGGCGUuc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 21888 | 0.68 | 0.627575 |
Target: 5'- -gAACGCCACCAA-GGCgUUCaCGCu-- -3' miRNA: 3'- agUUGCGGUGGUUgCCG-AAG-GCGuuc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 21006 | 0.68 | 0.661189 |
Target: 5'- aCAGCGUCAgCAGCaGGCaccacUUCGCAGGc -3' miRNA: 3'- aGUUGCGGUgGUUG-CCGa----AGGCGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 1452 | 0.68 | 0.627575 |
Target: 5'- cUCGACGCCAgCGGCGaGCccgucaacUUCCcgGCAGGc -3' miRNA: 3'- -AGUUGCGGUgGUUGC-CG--------AAGG--CGUUC- -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 42537 | 0.68 | 0.627575 |
Target: 5'- cCGACGUgGCuCGGCGGCgccUCUGCGGc -3' miRNA: 3'- aGUUGCGgUG-GUUGCCGa--AGGCGUUc -5' |
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18700 | 3' | -53.9 | NC_004682.1 | + | 8645 | 0.68 | 0.648877 |
Target: 5'- aUUGACGCCGCCGucugcGCGGUccucgcgUUCggCGCGAGa -3' miRNA: 3'- -AGUUGCGGUGGU-----UGCCG-------AAG--GCGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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