miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18700 3' -53.9 NC_004682.1 + 10204 0.67 0.705558
Target:  5'- --uACGCCGCCcaacaGGCGGUgaucucgUCCGCGc- -3'
miRNA:   3'- aguUGCGGUGG-----UUGCCGa------AGGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 49661 0.67 0.694548
Target:  5'- uUCAACuggGCCgagacGCUGACGGUggUUCGCAAGg -3'
miRNA:   3'- -AGUUG---CGG-----UGGUUGCCGa-AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 33871 0.67 0.694548
Target:  5'- aCGACGagGCCcaGGCGGCUcCCGcCGAGg -3'
miRNA:   3'- aGUUGCggUGG--UUGCCGAaGGC-GUUC- -5'
18700 3' -53.9 NC_004682.1 + 6072 0.67 0.683475
Target:  5'- aCGACGCCaauACCGGCGgGCUggugagCCGUuGGc -3'
miRNA:   3'- aGUUGCGG---UGGUUGC-CGAa-----GGCGuUC- -5'
18700 3' -53.9 NC_004682.1 + 12075 0.67 0.683475
Target:  5'- cCGACaCCaACCugaccACGGCgucgggUCCGCAGGg -3'
miRNA:   3'- aGUUGcGG-UGGu----UGCCGa-----AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 3827 0.67 0.676806
Target:  5'- cCAACGCCgaguacugcugguauGCCAaaGCGGCguagUCGCGAc -3'
miRNA:   3'- aGUUGCGG---------------UGGU--UGCCGaa--GGCGUUc -5'
18700 3' -53.9 NC_004682.1 + 6571 0.67 0.672351
Target:  5'- -gGGCaGCCugCAccacaggcuCGGCgaugUCCGCAAGg -3'
miRNA:   3'- agUUG-CGGugGUu--------GCCGa---AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 21006 0.68 0.661189
Target:  5'- aCAGCGUCAgCAGCaGGCaccacUUCGCAGGc -3'
miRNA:   3'- aGUUGCGGUgGUUG-CCGa----AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 23182 0.68 0.649997
Target:  5'- aCuGCGCCAC--GCGGCgaCCGCAc- -3'
miRNA:   3'- aGuUGCGGUGguUGCCGaaGGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 8645 0.68 0.648877
Target:  5'- aUUGACGCCGCCGucugcGCGGUccucgcgUUCggCGCGAGa -3'
miRNA:   3'- -AGUUGCGGUGGU-----UGCCG-------AAG--GCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 21888 0.68 0.627575
Target:  5'- -gAACGCCACCAA-GGCgUUCaCGCu-- -3'
miRNA:   3'- agUUGCGGUGGUUgCCG-AAG-GCGuuc -5'
18700 3' -53.9 NC_004682.1 + 1452 0.68 0.627575
Target:  5'- cUCGACGCCAgCGGCGaGCccgucaacUUCCcgGCAGGc -3'
miRNA:   3'- -AGUUGCGGUgGUUGC-CG--------AAGG--CGUUC- -5'
18700 3' -53.9 NC_004682.1 + 42537 0.68 0.627575
Target:  5'- cCGACGUgGCuCGGCGGCgccUCUGCGGc -3'
miRNA:   3'- aGUUGCGgUG-GUUGCCGa--AGGCGUUc -5'
18700 3' -53.9 NC_004682.1 + 12697 0.69 0.605169
Target:  5'- aCAGgGCCAaCGGCGGCUU-CGCGAc -3'
miRNA:   3'- aGUUgCGGUgGUUGCCGAAgGCGUUc -5'
18700 3' -53.9 NC_004682.1 + 27497 0.69 0.593997
Target:  5'- -gAACGCCagugcGCCGACGGCgauugugCCGCc-- -3'
miRNA:   3'- agUUGCGG-----UGGUUGCCGaa-----GGCGuuc -5'
18700 3' -53.9 NC_004682.1 + 12069 0.69 0.593997
Target:  5'- gUCGAUGCCGugGAUGGCagCCGCGu- -3'
miRNA:   3'- -AGUUGCGGUggUUGCCGaaGGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 43986 0.69 0.593997
Target:  5'- ----aGCCGCC--UGGCUcCCGCAGGg -3'
miRNA:   3'- aguugCGGUGGuuGCCGAaGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 12332 0.69 0.593997
Target:  5'- gUCAACGgCACCGuUGGCaaCCGCGu- -3'
miRNA:   3'- -AGUUGCgGUGGUuGCCGaaGGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 36643 0.69 0.582859
Target:  5'- aCGACuCCGaCGGCGGCaagCCGCAGGg -3'
miRNA:   3'- aGUUGcGGUgGUUGCCGaa-GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 24278 0.69 0.582859
Target:  5'- gCAACGCCGCCAagACGaGCUacgucuaCGCGAu -3'
miRNA:   3'- aGUUGCGGUGGU--UGC-CGAag-----GCGUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.