miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18700 3' -53.9 NC_004682.1 + 352 0.66 0.727342
Target:  5'- cCGAggaGCCGCCcccaAGCGGCUccccUCCGgGAGc -3'
miRNA:   3'- aGUUg--CGGUGG----UUGCCGA----AGGCgUUC- -5'
18700 3' -53.9 NC_004682.1 + 553 0.71 0.485489
Target:  5'- -gAGCGCCGCCGgaaGCGGCccuggaggCCGCuGGa -3'
miRNA:   3'- agUUGCGGUGGU---UGCCGaa------GGCGuUC- -5'
18700 3' -53.9 NC_004682.1 + 1452 0.68 0.627575
Target:  5'- cUCGACGCCAgCGGCGaGCccgucaacUUCCcgGCAGGc -3'
miRNA:   3'- -AGUUGCGGUgGUUGC-CG--------AAGG--CGUUC- -5'
18700 3' -53.9 NC_004682.1 + 3827 0.67 0.676806
Target:  5'- cCAACGCCgaguacugcugguauGCCAaaGCGGCguagUCGCGAc -3'
miRNA:   3'- aGUUGCGG---------------UGGU--UGCCGaa--GGCGUUc -5'
18700 3' -53.9 NC_004682.1 + 4979 0.73 0.378245
Target:  5'- gUCuggauCGCCA-CAGCGGCUUccagCCGCAGGg -3'
miRNA:   3'- -AGuu---GCGGUgGUUGCCGAA----GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 5072 0.72 0.405907
Target:  5'- cCGACGCCGCac-CGGCUgcucCCGCAc- -3'
miRNA:   3'- aGUUGCGGUGguuGCCGAa---GGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 5116 0.69 0.560719
Target:  5'- gUCGACGCCgcGCCGAUccuGGCgcgugCUGCGGGc -3'
miRNA:   3'- -AGUUGCGG--UGGUUG---CCGaa---GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 6072 0.67 0.683475
Target:  5'- aCGACGCCaauACCGGCGgGCUggugagCCGUuGGc -3'
miRNA:   3'- aGUUGCGG---UGGUUGC-CGAa-----GGCGuUC- -5'
18700 3' -53.9 NC_004682.1 + 6137 0.66 0.727342
Target:  5'- --uACGCCAaggcguaCGACGGCgggccgCUGCGAGu -3'
miRNA:   3'- aguUGCGGUg------GUUGCCGaa----GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 6571 0.67 0.672351
Target:  5'- -gGGCaGCCugCAccacaggcuCGGCgaugUCCGCAAGg -3'
miRNA:   3'- agUUG-CGGugGUu--------GCCGa---AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 8645 0.68 0.648877
Target:  5'- aUUGACGCCGCCGucugcGCGGUccucgcgUUCggCGCGAGa -3'
miRNA:   3'- -AGUUGCGGUGGU-----UGCCG-------AAG--GCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 9665 0.69 0.571763
Target:  5'- -gGACGCCcUCGACGcGCUggaUCGCAAGg -3'
miRNA:   3'- agUUGCGGuGGUUGC-CGAa--GGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 10204 0.67 0.705558
Target:  5'- --uACGCCGCCcaacaGGCGGUgaucucgUCCGCGc- -3'
miRNA:   3'- aguUGCGGUGG-----UUGCCGa------AGGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 11867 0.66 0.779865
Target:  5'- aCGACGCCGa-GACGGCaccggUCCaGUggGg -3'
miRNA:   3'- aGUUGCGGUggUUGCCGa----AGG-CGuuC- -5'
18700 3' -53.9 NC_004682.1 + 12069 0.69 0.593997
Target:  5'- gUCGAUGCCGugGAUGGCagCCGCGu- -3'
miRNA:   3'- -AGUUGCGGUggUUGCCGaaGGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 12075 0.67 0.683475
Target:  5'- cCGACaCCaACCugaccACGGCgucgggUCCGCAGGg -3'
miRNA:   3'- aGUUGcGG-UGGu----UGCCGa-----AGGCGUUC- -5'
18700 3' -53.9 NC_004682.1 + 12332 0.69 0.593997
Target:  5'- gUCAACGgCACCGuUGGCaaCCGCGu- -3'
miRNA:   3'- -AGUUGCgGUGGUuGCCGaaGGCGUuc -5'
18700 3' -53.9 NC_004682.1 + 12697 0.69 0.605169
Target:  5'- aCAGgGCCAaCGGCGGCUU-CGCGAc -3'
miRNA:   3'- aGUUgCGGUgGUUGCCGAAgGCGUUc -5'
18700 3' -53.9 NC_004682.1 + 12812 0.79 0.159512
Target:  5'- cCGACGCCGCCAgcgaGCGGCUcagaagcCCGCAGa -3'
miRNA:   3'- aGUUGCGGUGGU----UGCCGAa------GGCGUUc -5'
18700 3' -53.9 NC_004682.1 + 13129 0.66 0.769631
Target:  5'- aCAA-GCCGCagAACGGCaUCCGCu-- -3'
miRNA:   3'- aGUUgCGGUGg-UUGCCGaAGGCGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.